Locus 2489

Sequence ID X_DroMel_CAF1
Location 6,616,476 – 6,616,585
Length 109
Max. P 0.842319
window4072

overview

Window 2

Location 6,616,476 – 6,616,585
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -26.07
Consensus MFE -24.82
Energy contribution -24.93
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.99
Structure conservation index 0.95
SVM decision value 0.76
SVM RNA-class probability 0.842319
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6616476 109 - 22224390
CGAGAUGUAUUGUGUUGAAUAAAUAAAUUAUUAGGUAAAGUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG
.(.(((..(((((((.(((((((((..............(.(((((((...))))))))((((.((((.....)))).)))))))))))))..)))))))...)))).. ( -27.30)
>DroSec_CAF1 10616 109 - 1
CGAGAUGUAUUGUGUUUAAUAAAUAAAUAAUUAGGCAAAGUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG
.(.(((..(((((((..((((((((........(((((.(.((.....)))...)))))((((.((((.....)))).))))))))))))...)))))))...)))).. ( -28.00)
>DroSim_CAF1 2875 109 - 1
CGAGAUGUAUUGUGGUUAAUAAAUAAAUAAUUAGGUAAAAUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG
.(.(((..((((((...((((((((................(((((((...))))))).((((.((((.....)))).))))))))))))....))))))...)))).. ( -22.90)
>consensus
CGAGAUGUAUUGUGUUUAAUAAAUAAAUAAUUAGGUAAAGUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG
.(.(((..(((((((..((((((((........(((((...((.....))....)))))((((.((((.....)))).))))))))))))...)))))))...)))).. (-24.82 = -24.93 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:05 2006