| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,581,434 – 6,581,542 |
| Length | 108 |
| Max. P | 0.791662 |
| Location | 6,581,434 – 6,581,542 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -29.86 |
| Consensus MFE | -16.82 |
| Energy contribution | -16.96 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6581434 108 - 22224390 UUUUUUGCCUGCUCGGGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAU--A----------UAUGUGCAAGUGUACAUUCCACUCUAUGUGUUUUUGCGCCGAAA ...(((((.((((.((.....)))))).)))))...........((((((((((((.((((..--.----------....)))).))))))....(((.....)))...))))))..... ( -32.50) >DroSec_CAF1 25799 103 - 1 ---UUUGCCUGCUCGGGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAU--A----------UAUGUGCAUGUGUAU-UUCCAGUCUAUAUGUU-UUGCGCCGAAA ---(((((.((((.((.....)))))).))))).(((..(((((.((.(((((((((((((..--.----------....)))))))))))-)).)))))))...)))-........... ( -30.90) >DroSim_CAF1 37842 110 - 1 UUUUUUGCCUGCUCGGGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAU--A------UACAUAUGUGCAUGUGUAU-UUCCAGUCUAUAUGUU-UUGCGCCGAAA ...(((((.((((.((.....)))))).))))).(((..(((((.((.(((((((((((((.(--(------(....))))))))))))))-)).)))))))...)))-........... ( -31.30) >DroEre_CAF1 25123 107 - 1 UUUUUUGCCUGC-CGGGGUUACAAGCAUGCAAAUAAC--UAGAUGUGCAUGUG------CAAU--AAAUGUGUAUAUAUGUACAUACAUAU-AUCCGCUAUAUAUGUU-UUGCGCCGAAA ............-(((.((.(((.(((((((.((...--...)).))))))).------....--....(((.((((((((....))))))-)).)))......))).-..)).)))... ( -26.40) >DroYak_CAF1 36465 112 - 1 UUUUUUGCCUGCUCGGGGUUACCAGAAUGCAAAUAACUCUAGAUGUGCAUGUG------CACUAUACAUAUGUACGUACAUAUGUGUAUAU-AUCCACUCUAUAUGUU-UUGCGCCGAAA ............((((((...)).....(((((......((((.(((.(((((------...(((((((((((....))))))))))))))-)).))))))).....)-)))).)))).. ( -28.20) >consensus UUUUUUGCCUGCUCGGGGUCACCAGCAUGCAAAUAACUCUAGAUGUGCAAGUGCAUGUGCAAU__A______UA__UAUGUGCAUGUGUAU_UUCCACUCUAUAUGUU_UUGCGCCGAAA ...(((((.((((.((.....)))))).)))))...........(((((..(((....)))....................(((((((............)))))))...)))))..... (-16.82 = -16.96 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:26 2006