Locus 2448

Sequence ID X_DroMel_CAF1
Location 6,565,508 – 6,565,600
Length 92
Max. P 0.779181
window3978

overview

Window 8

Location 6,565,508 – 6,565,600
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.55
Mean single sequence MFE -19.14
Consensus MFE -18.28
Energy contribution -18.04
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.19
Structure conservation index 0.96
SVM decision value 0.55
SVM RNA-class probability 0.779181
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6565508 92 + 22224390
CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA
......(((((((((.....)))).)))))..........((((((((..((..........(((.....)))..))..))))))))..... ( -18.70)
>DroSec_CAF1 10487 92 + 1
CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA
......(((((((((.....)))).)))))..........((((((((..((..........(((.....)))..))..))))))))..... ( -18.70)
>DroSim_CAF1 21013 92 + 1
CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA
......(((((((((.....)))).)))))..........((((((((..((..........(((.....)))..))..))))))))..... ( -18.70)
>DroEre_CAF1 10176 85 + 1
CCUCAAUAUUUCUCAUUCAUUGGGCAAAUAAACAGAAGCCCGGUCGCGUGUUCCAUUC-----G--AAAUUCGCAGAUGUGCGACUGAUUAA
......(((((((((.....)))).)))))..........((((((((..((.....(-----(--.....))..))..))))))))..... ( -19.20)
>DroYak_CAF1 19942 85 + 1
CGUCAAUAUUUCUCAUUCAUUGGGCAAAUAAACAUUAAUCCGGUCGCGUGUUCCAUUC-----G--AAAUUCGCAGAUGUGCGACUGAUUAA
......(((((((((.....)))).)))))....((((((.(((((((..((.....(-----(--.....))..))..))))))))))))) ( -20.40)
>consensus
CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA
......(((((((((.....)))).)))))..........((((((((..((.......................))..))))))))..... (-18.28 = -18.04 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:41 2006