Locus 2442

Sequence ID	X_DroMel_CAF1
Location	6,549,180 – 6,549,300
Length	120
Max. P	0.813106

overview

Window 5

Location	6,549,180 – 6,549,300
Length	120
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	99.44
Mean single sequence MFE	-26.71
Consensus MFE	-26.63
Energy contribution	-26.63
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.76
Structure conservation index	1.00
SVM decision value	0.65
SVM RNA-class probability	0.813106
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6549180 120 + 22224390
UUGGAGGAUUUCCACUGCGACUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA
..((((..............))))..((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. ( -26.20)
>DroSim_CAF1 4183 120 + 1
UUGGAGGAUUUCCACUGCGAUUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA
..((.(((..((......)).)))))((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. ( -26.96)
>DroYak_CAF1 4196 120 + 1
UUGGAGGAUUUCCACUGCGAUUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA
..((.(((..((......)).)))))((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. ( -26.96)
>consensus
UUGGAGGAUUUCCACUGCGAUUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA
..((.(((..((......)).)))))((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. (-26.63 = -26.63 +  -0.00)

alignment

secondary structure

dotplot

Window 6

Location	6,549,180 – 6,549,300
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	99.44
Mean single sequence MFE	-26.33
Consensus MFE	-26.33
Energy contribution	-26.33
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.31
Structure conservation index	1.00
SVM decision value	-0.03
SVM RNA-class probability	0.516395
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6549180 120 - 22224390
UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAGUCGCAGUGGAAAUCCUCCAA
...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. ( -26.80)
>DroSim_CAF1 4183 120 - 1
UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAAUCGCAGUGGAAAUCCUCCAA
...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. ( -26.10)
>DroYak_CAF1 4196 120 - 1
UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAAUCGCAGUGGAAAUCCUCCAA
...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. ( -26.10)
>consensus
UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAAUCGCAGUGGAAAUCCUCCAA
...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. (-26.33 = -26.33 +  -0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:30 2006