| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,540,588 – 6,540,689 |
| Length | 101 |
| Max. P | 0.963498 |
| Location | 6,540,588 – 6,540,689 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 74.14 |
| Mean single sequence MFE | -19.74 |
| Consensus MFE | -8.96 |
| Energy contribution | -9.48 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6540588 101 - 22224390 UUUAUAAAUCGCAUUUAUUCAUUUCAAAAAGAUUUGAAAGCUUUGGAAUGUUAAUGCCCUGUUAACAUAACAUAACAUAGUUGAUUGUUAUGUAAAGUAAG .................((((..((.....))..)))).(((((...((((((((.....)))))))).((((((((........)))))))))))))... ( -19.80) >DroSec_CAF1 25035 93 - 1 -------AUCGUAUUUAUUCAUUUCAAAAAUACUUCAAAGCUUUGAAAUGUUAAUGCCCUGUUAACAUAGCAG-UUACAGUUGACUGUUGUGAAAAGUAAG -------...(((((....(((((((((.............)))))))))..)))))........((((((((-(((....)))))))))))......... ( -21.82) >DroSim_CAF1 17361 99 - 1 -UUACAAAUCGUAUUUAUUCAUUUCAAAAAGACUUCAAAGCUUUGAAAUGUUAAUGCCCUGUUAACAUAGCAG-UUACAGUUGACUGUUAUGAAAAGUAAG -((((.....(((((....((((((((..((.((....))))))))))))..)))))........((((((((-(((....)))))))))))....)))). ( -23.90) >DroEre_CAF1 13581 84 - 1 UUUUUAAAUCAUGUCAAUUCAU--------------AAAGCUUUCGAAUGUAAAUGCACUGUUAACAUAACAG-UUACAGGAGACU--AAUGUAAAGUGAG ........((((.......(((--------------..((.((((...((((.....(((((((...))))))-))))).))))))--.)))....)))). ( -10.50) >DroYak_CAF1 13428 86 - 1 -------------UCAAUUCAU-UCAAAGAGAUUUGAAAGCUUUGCAAUGUAAAUGCCAUGUUAACAUAACAG-UUACAGGUGACUGUAAUGUAAAGUAAG -------------........(-(((((....)))))).(((((((.((((.(((.....))).))))....(-((((((....))))))))))))))... ( -22.70) >consensus _UU__AAAUCGUAUUUAUUCAUUUCAAAAAGACUUCAAAGCUUUGAAAUGUUAAUGCCCUGUUAACAUAACAG_UUACAGUUGACUGUUAUGUAAAGUAAG .......................................(((((...((((((((.....))))))))..((....((((....))))..)).)))))... ( -8.96 = -9.48 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:24 2006