| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,539,944 – 6,540,058 |
| Length | 114 |
| Max. P | 0.528471 |
| Location | 6,539,944 – 6,540,058 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 94.74 |
| Mean single sequence MFE | -32.11 |
| Consensus MFE | -30.08 |
| Energy contribution | -29.80 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.94 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6539944 114 + 22224390 AAACCUUAACCCUUUGAUUUGUAAUUCCAUUUAUUCGCCGUGCUGCGGUGCAUCCAGGCGCCUUUUCUCUUGGUGGGUUAAAAGGAUGUUCUGUGGCGGCGCAGCGUUAACUUA .....(((((.....((...((((......)))))).....((((((.(((...(((((((((((((((.....)))..)))))).)).))))..))).))))))))))).... ( -30.10) >DroSec_CAF1 24375 114 + 1 AAACCUUAACCCAUCGAUUUGUAAUUCCAUUUAAUCGCCGUGCUGCGGUGCAUCCAGACGCCUUUUCUCUCAGUGGGUUAAAAGGAUGUUCUGUGGCGGCGCAGCGUUAACUUA .....(((((....(((((.............)))))....((((((.(((...((((((((((((..((.....))..)))))).)).))))..))).))))))))))).... ( -33.52) >DroSim_CAF1 16695 114 + 1 AAACCUUAACCCUUCGAUUUGUAAUUCCAUUUAAUCGCCGUGCUGCGGUGCAUCCAGACGCCUUUUCUCUCAGUGGGUUAAAAGGAUGUUCUGUGGCGGCGCAGCGUUAACUUA .....(((((....(((((.............)))))....((((((.(((...((((((((((((..((.....))..)))))).)).))))..))).))))))))))).... ( -33.52) >DroEre_CAF1 13030 114 + 1 AAACCUUAACCCUUUGAUUUGUAAUUCCAUUUAAUCGCUGUGUUGCGGUGCAUUCAGGCGCCUUUUUUCUCAGUGGGUUAAAAGGAUGUUCAGUGGCAGCGCAGCGUUAACUUA ..............................((((.((((((((((((((((......)))))........((.((..(.........)..)).))))))))))))))))).... ( -32.90) >DroYak_CAF1 12869 114 + 1 AAACCUUAACCCUUCGAUUUGUAAUUCCAUUUAAUCGCCGUGUUGCGGUGCAUCCAGGCGCCUUUUCCCUCAGUGGGUUAAAAGGAUGUUCAGUGGCGGCGCAGCGUUAACUUA .....(((((....(((((.............)))))....((((((.(((.....(((((((((((((.....)))..)))))).)))).....))).))))))))))).... ( -30.52) >consensus AAACCUUAACCCUUCGAUUUGUAAUUCCAUUUAAUCGCCGUGCUGCGGUGCAUCCAGGCGCCUUUUCUCUCAGUGGGUUAAAAGGAUGUUCUGUGGCGGCGCAGCGUUAACUUA .....(((((....(((((.............)))))....((((((.(((...((((((((((((..((.....))..)))))).)).))))..))).))))))))))).... (-30.08 = -29.80 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:22 2006