Locus 2419

Sequence ID X_DroMel_CAF1
Location 6,469,629 – 6,469,720
Length 91
Max. P 0.537683
window3934

overview

Window 4

Location 6,469,629 – 6,469,720
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.39
Mean single sequence MFE -19.08
Consensus MFE -16.50
Energy contribution -16.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.20
Structure conservation index 0.86
SVM decision value 0.01
SVM RNA-class probability 0.537683
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6469629 91 + 22224390
GGCAUGAGUUGUGCAGCAGUAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAUCGCUAUUUGGA
.((.(((((((((.((.........)).)))))).)))((....))......))....(((((..(((...(.....)...))).))))). ( -16.90)
>DroSec_CAF1 23860 91 + 1
GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAUCGCUAGCUGGA
.((.(((((((((.((.........)).)))))).)))((....))......))..........((((..(((........))).)))).. ( -19.80)
>DroSim_CAF1 24322 91 + 1
GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAACGCUAACUGGA
.((.(((((((((.((.........)).)))))).)))((....))......))..........((((..(((........))).)))).. ( -19.50)
>DroEre_CAF1 22979 89 + 1
GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAUCAACACUAAAACGGUACAGUCAUACAUCGGUAU--AGU
(((.(((((((((.((.........)).)))))).)))((....)).........................)))((((....))))--... ( -17.40)
>DroYak_CAF1 23565 89 + 1
GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAAGAGUACAGUCAUGCAUCGCUAU--GGC
.((((((.((((((.((.(((.....)))...))....((....))....................))))))))))))........--... ( -21.80)
>consensus
GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAUCGCUAU_UGGA
(((.(((((((((.((.........)).)))))).)))((....)).........................)))................. (-16.50 = -16.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:01 2006