Locus 2409

Sequence ID X_DroMel_CAF1
Location 6,447,064 – 6,447,160
Length 96
Max. P 0.854467
window3916

overview

Window 6

Location 6,447,064 – 6,447,160
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 80.35
Mean single sequence MFE -29.73
Consensus MFE -12.44
Energy contribution -12.36
Covariance contribution -0.08
Combinations/Pair 1.18
Mean z-score -2.44
Structure conservation index 0.42
SVM decision value 0.80
SVM RNA-class probability 0.854467
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6447064 96 - 22224390
CUGGAAAUUAUUGUAAUCCCAUAACCGCUAUCUCU-GCGCCAGUGUGCGUGAGUGCGAGUGGUAAAGGGAUAGGGUAGGGGAAAGAGCGGGAGCUCA
................((((...(((.((((((((-..((((.((..(....)..))..))))..)))))))))))..))))..((((....)))). ( -43.00)
>DroSec_CAF1 4582 90 - 1
CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCU-GCGCCAGUGUGCGUGAGU------GGGAAAGAGAAAGGGUGGGGAAAAGAGCGGGGGUGCA
................((((....((.((.(((((-...((.....((....))------.))..))))).)).)).)))).....(((....))). ( -23.80)
>DroSim_CAF1 4594 90 - 1
CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCU-GCGCCAGUGUGCGUGAGU------GGGAAAGAGAAAGGGUAGGGGAAAGAGCGGGGGCGCA
................((((....((.((.(((((-...((.....((....))------.))..))))).)).))..))))....(((....))). ( -25.10)
>DroEre_CAF1 4006 77 - 1
CUGGAAAUUAUGGUAAACCCAUAAGCGCUGUCUCU-GCGCCAGUGUGCGUGAGU------GCCAGU------------GGGAAAGAGA-GGGGCGCA
.......((((((.....))))))(((((.(((((-...(((.((..(....).------.).).)------------))...)))))-.).)))). ( -30.50)
>DroYak_CAF1 4791 79 - 1
CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCUCACGCCAGUGUGCGUGAGU------GCGAGU------------GGGAAAGAGACGGGGCGCA
.(((..............)))...(((((.(((((..(.(((.((..(....).------.))..)------------)))..)))))...))))). ( -26.24)
>consensus
CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCU_GCGCCAGUGUGCGUGAGU______GGGAAAG_GA_AGGGU_GGGGAAAGAGCGGGGGCGCA
.(((..............)))...(((((..((((.(((....)))((....)).............................))))....))))). (-12.44 = -12.36 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:46 2006