Locus 2400

Sequence ID X_DroMel_CAF1
Location 6,430,227 – 6,430,318
Length 91
Max. P 0.944740
window3906

overview

Window 6

Location 6,430,227 – 6,430,318
Length 91
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 84.23
Mean single sequence MFE -21.23
Consensus MFE -15.81
Energy contribution -16.03
Covariance contribution 0.23
Combinations/Pair 1.12
Mean z-score -2.77
Structure conservation index 0.74
SVM decision value 1.35
SVM RNA-class probability 0.944740
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6430227 91 + 22224390
UACAUACAUUCAUAACUACACAGAUGCAAAAUGUGCGCAGUUUUAAGCAUACAAAUGAACAUAAAAUUGAGCUU----------------AUGCAUUUGCAUUCAAA
....................((((((((......((.((((((((..(((....)))....)))))))).))..----------------.))))))))........ ( -16.80)
>DroSec_CAF1 47184 103 + 1
UA----CAUUCAUAACUACACAGAUGCAAAAUGGGCGCAGUUCUAAGCGCACAAAUGAACAUAAAAUUGAGCUUAAAUGGCAAAUUAUGUAUGUAUUUGCAUUCAAA
..----................((((((((.((.((((........)))).)).....(((((.((((..(((.....))).))))...))))).)))))))).... ( -21.10)
>DroSim_CAF1 45926 103 + 1
UA----CAUUCAUAACUACACAGAUGCAAAAUGUGCGCAGUUUUAAGCGCACAAAUGAACAUAAAAUUGAGCUUAAAUGGCAAAUUAUGUAUGUAUUUGCAUUCAAA
..----................((((((((.(((((((........))))))).....(((((.((((..(((.....))).))))...))))).)))))))).... ( -25.80)
>consensus
UA____CAUUCAUAACUACACAGAUGCAAAAUGUGCGCAGUUUUAAGCGCACAAAUGAACAUAAAAUUGAGCUUAAAUGGCAAAUUAUGUAUGUAUUUGCAUUCAAA
....................((((((((...(((((((........)))))))......((......))......................))))))))........ (-15.81 = -16.03 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:37 2006