Locus 2390

Sequence ID X_DroMel_CAF1
Location 6,379,670 – 6,379,771
Length 101
Max. P 0.575108
window3888

overview

Window 8

Location 6,379,670 – 6,379,771
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.57
Mean single sequence MFE -47.52
Consensus MFE -42.18
Energy contribution -42.58
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.18
Structure conservation index 0.89
SVM decision value 0.08
SVM RNA-class probability 0.575108
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6379670 101 - 22224390
GUUCACGGGCGGCCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG
(((....)))(((...(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..)))))))))..))). ( -48.10)
>DroSec_CAF1 5173 101 - 1
GUUCACGGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG
.......((((.....(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..))))))))).)))). ( -47.10)
>DroSim_CAF1 5349 101 - 1
GUUCACGGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG
.......((((.....(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..))))))))).)))). ( -47.10)
>DroEre_CAF1 5592 101 - 1
GUUCACGGGCGGUCCACCGGAUCCGGAGGUGGACAGGGGCAUGGUGCCACAACUGGAGGCGGCGUUUCCUCCGCCACCGGGAACGACGGAUCCUGAUGCCG
.......(((((....))(((((((..(((((.((......))...))))..((((.(((((.(....).))))).))))...)..)))))))....))). ( -45.00)
>DroYak_CAF1 5373 101 - 1
GUUCACGGGCGGACCACCGGAUCCGGCGGUGGACAUUGGCAUGGUGGCACAACUGAAGGCGCUGUUUCCACCGCCAUCGGAAACGACGGAUCCGGAUGCCG
.......((((.....(((((((((((((((((.((.(((.((((......))))...)).).)).))))))))).(((....))).)))))))).)))). ( -50.30)
>consensus
GUUCACGGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG
.......((((.....(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..))))))))).)))). (-42.18 = -42.58 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:21 2006