| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,376,887 – 6,376,991 |
| Length | 104 |
| Max. P | 0.744641 |
| Location | 6,376,887 – 6,376,991 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 87.17 |
| Mean single sequence MFE | -34.48 |
| Consensus MFE | -25.48 |
| Energy contribution | -26.64 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6376887 104 - 22224390 CAAUCACGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCUUCUCGCUUCCGGCGGCUAGCAGGUU-AUCCUGCU--CCGGCGGAGUGGGUUGCUGCCAUGUAGA .....((((.((..(((.(((.....))).)))......(((..((((((.(((.(((..((((((..-..))))))--))).)))))))))..))))).))))... ( -39.60) >DroSec_CAF1 2416 104 - 1 CAAUCACUUUGCGAUGAUGAAACAAUUUCUUCAACUCAAGGCUUCUCGCUUCUGGCGGCUGACAGGUC-AUCCUGCU--CCGGCGAAGUCGGUCGCUUCCAUGUAGA ......(((((.(.(((.(((.....))).))).).)))))..(((.((....(((((((((((((..-..)))((.--...))...)))))))))).....))))) ( -29.00) >DroSim_CAF1 2577 104 - 1 CAAUCACGUUGCGAUGAUGAAACAAUUUCUUCAACUCAAGGCUUCUCGCUUCCGGCGGCUGACAGGUC-AUCCUGCU--CCGGCGGAGUGGGUCGCUGCCAUGUAGA .....((((.((..(((.(((.....))).)))......(((..((((((.(((.(((..(.((((..-..))))).--))).)))))))))..))))).))))... ( -35.70) >DroEre_CAF1 2742 102 - 1 CAAUCUCGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCUUCCCGCAUUC---UGCUAGCAGGUCAAUUCUGCU--CAGUAGGAGUGGGUCGCUGCCAUGUAGA ...((((((.((..(((.(((.....))).)))......(((..(((((.(((---((((((((((.....))))))--.))))))))))))..))))).))).))) ( -36.20) >DroYak_CAF1 2570 104 - 1 CAAUCUCGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCAUCUCGCUCCC---GGCUAGCAGGUAAAUCCUGCUCCCAGGUGUAGUGGGUCGCUGCCAUGUAGA ...((((((.((..(((.(((.....))).)))......(((..(((((((((---((..((((((.....)))))).)).)).).))))))..))))).))).))) ( -31.90) >consensus CAAUCACGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCUUCUCGCUUCCGGCGGCUAGCAGGUC_AUCCUGCU__CCGGCGGAGUGGGUCGCUGCCAUGUAGA ........(((((.(((.(((.....))).)))......(((..(((((.((((.(((..((((((.....))))))..))).)))))))))..)))....))))). (-25.48 = -26.64 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:20 2006