| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,373,521 – 6,373,616 |
| Length | 95 |
| Max. P | 0.757701 |
| Location | 6,373,521 – 6,373,616 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 77.40 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -18.06 |
| Energy contribution | -17.73 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6373521 95 + 22224390 AAUAUUUUCGGCCACUCAAUACGACAUUUGUA----UUAUUGGCGGUUGACCUCCUGGUCA---------------CGAUGUGUUUUCCACUCCAAAUCGCUAAUGGAAAAACU ....(((((........(((((((...)))))----))((((((((((((((....)))).---------------.((.(((.....)))))..)))))))))).)))))... ( -23.80) >DroSec_CAF1 3583 95 + 1 AAUAUUUUCGGCCACUUGAUUCGACAUUUGUA----UUAUUGGCGGUUGACCUCCUGGUCA---------------CGAUGUGUUUUCCACUCCAAAUCGCGAAUGGAAAAACU .......(((((((..((((.(((...))).)----))).))))...(((((....)))))---------------)))....(((((((.(((.....).)).)))))))... ( -22.50) >DroEre_CAF1 4257 114 + 1 AAUAUUUUUGGGCAUUUAAUUCGACAUAUGUAUGUACUAUUGGCGGUUGACCUCCUGGUCACAACAUUGCCGUCAACGAUGUGUUUUUCAUUUCGAAUCUCCGGUGGGAAAACU ...........(((((.......((((....))))....(((((((((((((....))))).......)))))))).)))))(((((((...(((......)))..))))))). ( -27.81) >consensus AAUAUUUUCGGCCACUUAAUUCGACAUUUGUA____UUAUUGGCGGUUGACCUCCUGGUCA_______________CGAUGUGUUUUCCACUCCAAAUCGCCAAUGGAAAAACU ....................................((((((((((((((((....)))).................(..(((.....)))..).))))))))))))....... (-18.06 = -17.73 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:17 2006