| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,327,346 – 6,327,440 |
| Length | 94 |
| Max. P | 0.600714 |
| Location | 6,327,346 – 6,327,440 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.66 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -13.87 |
| Energy contribution | -15.23 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6327346 94 - 22224390 ----------------UGGG--GAAUUCG-CUGAAUGCCGAAUGCGGAGUAGACAAGCAGGGCAACCUGCGGUUGGCAGUUGGGUAAACCAAACAACAGCGCCAGAAAUACGG ----------------...(--(....((-(((..((((((.(((......).)).(((((....)))))..)))))).((((.....))))....))))))).......... ( -31.20) >DroPse_CAF1 9541 82 - 1 U-----AA-------AUAGA--GACAGCGACAGACAGCCGAGAGAGGGG-------GCCGACCGACCUGCGGUUGUGAGUUGGGUAAACCGAC----------AGAGAGAUGG .-----..-------.....--..((.(.....(((((((....(((.(-------(....))..))).)))))))..(((((.....)))))----------.....).)). ( -21.20) >DroSec_CAF1 12056 94 - 1 ------AG-------GGGG-----UAGCA-CUCAAUGCCGAAUGCGGAGUAGACAAGCAGGGCAACCUGCGGUUGGCAGUUGGGUAAACCAAACAACAGCGCCAGAAAUACGG ------..-------..((-----(.(((-(((...((.....)).))))......(((((....))))).((((....((((.....)))).)))).))))).......... ( -29.90) >DroSim_CAF1 5446 97 - 1 ------AG-------GGGGG--GAAAGCG-CUGAAUGCCGAAUGCGGAGUAGACAAGCAGGGCAACCUGCGGUUGGCAGUUGGGUAAACCAAACAACAGCGCCAGAAAUACGG ------..-------.....--....(((-(((..((((((.(((......).)).(((((....)))))..)))))).((((.....))))....))))))........... ( -34.20) >DroEre_CAF1 9617 99 - 1 ------GG-------GGGGGCGCUGAAUG-CUGAAUGCUAAAUGCGGAGUAGACAAGGAAGGCAACCUGCGGUUGGCAGUUCGGUAAACCAAACAACAGCGCCAGAAAUACGG ------..-------...(((((((..((-(((((((((((.(((((.((.(.(......).).))))))).)))))).)))))))..........))))))).......... ( -32.00) >DroYak_CAF1 8091 112 - 1 AAAAUCAGGAAAACAGGGGCCGCUGAACG-CUGAAUGCUGAAUGCGUGGUAGACAAGCUGGGCAACCUGCGGUUGGCAGUUGGGUAAACCAAACAACAGCGCCAGAAAUACGG .................(((.((((...(-(..(.(((.(..(((.((((......)))).)))..).))).)..))..((((.....))))....))))))).......... ( -30.90) >consensus ______AG_______GGGGG__GAAAGCG_CUGAAUGCCGAAUGCGGAGUAGACAAGCAGGGCAACCUGCGGUUGGCAGUUGGGUAAACCAAACAACAGCGCCAGAAAUACGG .....................................(((................(((((....))))).((((....((((.....))))....))))..........))) (-13.87 = -15.23 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:50 2006