Locus 2365

Sequence ID X_DroMel_CAF1
Location 6,304,315 – 6,304,405
Length 90
Max. P 0.981610
window3850

overview

Window 0

Location 6,304,315 – 6,304,405
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 74.81
Mean single sequence MFE -28.30
Consensus MFE -17.07
Energy contribution -18.93
Covariance contribution 1.87
Combinations/Pair 1.13
Mean z-score -2.18
Structure conservation index 0.60
SVM decision value 1.89
SVM RNA-class probability 0.981610
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6304315 90 + 22224390
AAUGGGCACAACCUGCGGCUAAGGGAUUUCGCCCAGGAUCUCGUCUGCAGGGUCUCCAAUGCAAUAUCAACCAGUUGCAUGCUGCCCCUC
...((((((..(((((((....(((((((......)))))))..))))))).......(((((((........)))))))).)))))... ( -32.80)
>DroSec_CAF1 36735 90 + 1
AAUGGGCAAAAGCUGCGGCUAAGGGACUUCGCCCAGGACCUCAUCUGCAGGGUCUCCAAUGCAAUCUCAACCAGUUGCAUGCUGCCCCUC
...(((((...(((((((((..(((......))).((((((........)))))).................))))))).)))))))... ( -29.80)
>DroSim_CAF1 34385 90 + 1
AAUGGGCGAAAUCUGCGGCCAAGGGACUUCGCCCAGGACCUCAUCUGCAGGGUCUCCAAUGCAANNNNNNNNNNNNNNNNNNNNNNNNNN
..((((((((.(((.(......)))).))))))))((((((........))))))................................... ( -22.30)
>consensus
AAUGGGCAAAACCUGCGGCUAAGGGACUUCGCCCAGGACCUCAUCUGCAGGGUCUCCAAUGCAAU_UCAACCAGUUGCAUGCUGCCCCUC
..((((.....(((((((...(((..((......))..)))...)))))))...))))(((((((........))))))).......... (-17.07 = -18.93 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:48 2006