Locus 2364

Sequence ID X_DroMel_CAF1
Location 6,303,467 – 6,303,560
Length 93
Max. P 0.917348
window3849

overview

Window 9

Location 6,303,467 – 6,303,560
Length 93
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 90.43
Mean single sequence MFE -20.52
Consensus MFE -17.85
Energy contribution -17.10
Covariance contribution -0.75
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.87
SVM decision value 1.11
SVM RNA-class probability 0.917348
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6303467 93 - 22224390
-------CUCUCUCUCUGUUGCCAUCAUCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA
-------.........((((((...((((((...((((.(((.((.......)).)))))))..))))))..))))))..(((((......))))).... ( -21.70)
>DroSec_CAF1 35916 88 - 1
-------CUCU--CUCUGUUGCAA---UCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA
-------....--...((((((((---((((...((((.(((.((.......)).)))))))..)))))..)))))))..(((((......))))).... ( -20.20)
>DroSim_CAF1 33521 88 - 1
-------CUCU--CUCUGUUGCCA---UCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA
-------....--...((((((((---((((...((((.(((.((.......)).)))))))..))))))..))))))..(((((......))))).... ( -21.20)
>DroYak_CAF1 33021 95 - 1
UCUCUCUCUCU--CUCUGUUGUCA---UCUAUCUAUCUCGCUCGCUUUGUUCGUCAGCAGGUUUUGGAUGUUGCAGCAUCUUUGGUUACACUCAAAAUGA
...........--..((((...((---((((...((((.(((.((.......)).)))))))..))))))..))))(((.(((((......)))))))). ( -19.00)
>consensus
_______CUCU__CUCUGUUGCCA___UCUAUCUGUCUCGCUCGCUUUGUUCGUCAGCAGAUUUUGGAUGCUGCAACAUCUUUGGUUACACUCAAAAUGA
................((((((.....((((...((((.(((.((.......)).)))))))..))))....))))))..(((((......))))).... (-17.85 = -17.10 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:47 2006