| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 808,921 – 809,012 |
| Length | 91 |
| Max. P | 0.760545 |
| Location | 808,921 – 809,012 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 80.93 |
| Mean single sequence MFE | -27.54 |
| Consensus MFE | -15.76 |
| Energy contribution | -18.16 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 808921 91 - 22224390 AGUUAAUGGAUUAAAGGGUUAGUUCGCGGGGUCACCACCGCGAAAAUUCUUUAGUUAAACAAACGUGGAGCGUUCAUACCAGAGCUCAUUC .(((....((((((((((((..(((((((((...)).))))))))))))))))))).....)))...((((............)))).... ( -27.80) >DroSec_CAF1 5400 91 - 1 AGUUAAUGGAUUAAAGGGUUAGUUCGCGGGGUCACCACCGCGAAAAUUCUUUAGUCAAACAAACGUGGAGCUUGCACAACAGAGCUCAUGC .(((....((((((((((((..(((((((((...)).))))))))))))))))))).....)))...((((((........)))))).... ( -32.70) >DroSim_CAF1 6279 91 - 1 AGUUAAUGGAUUAAAGGGUUAGUUCGCGGGGUCACCACCGCGAAAAUUCUUUAGUCAAACAAACGUGGAGCUUGCACACCAGAGCUCAUGC .(((....((((((((((((..(((((((((...)).))))))))))))))))))).....)))...((((((........)))))).... ( -32.70) >DroEre_CAF1 5340 85 - 1 AACCAUUAGUUUAAAGGG-GAGUUCGCGGGGUCACCGCCAGGAAAAUGAUUUGGUUAAAUAAGCGAGGAGCUCUGGUGC--G--CAGA-GC ..................-...(((((((.....))((((((.......)))))).......)))))..((((((....--.--))))-)) ( -19.60) >DroYak_CAF1 5411 88 - 1 GGUUAAUGGAUUAAAGGGUGAGUUCGCGGGGUCACCGCCAGGAAAAUGAUUUAGUUAAACAAACGUGGAGCUGACACACCAG--CUCG-GC .(((....(((((((..((...(((((((.....))))..)))..))..))))))).....)))((.((((((......)))--))).-)) ( -24.90) >consensus AGUUAAUGGAUUAAAGGGUUAGUUCGCGGGGUCACCACCGCGAAAAUUCUUUAGUUAAACAAACGUGGAGCUUGCACACCAGAGCUCAUGC ........(((((((((((...(((((((((...)).))))))).)))))))))))...........((((............)))).... (-15.76 = -18.16 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:38 2006