Locus 2357

Sequence ID X_DroMel_CAF1
Location 6,288,510 – 6,288,611
Length 101
Max. P 0.555142
window3840

overview

Window 0

Location 6,288,510 – 6,288,611
Length 101
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 78.00
Mean single sequence MFE -28.02
Consensus MFE -14.56
Energy contribution -15.12
Covariance contribution 0.56
Combinations/Pair 1.30
Mean z-score -2.09
Structure conservation index 0.52
SVM decision value 0.04
SVM RNA-class probability 0.555142
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6288510 101 - 22224390
UUUAAUGACCUAACCGUUA------UUGUUGCUUUUGCCAGUUGCUUGCUUGCUUGCUGGUUGUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA
..(((((((......))))------)))..((....((((((.((......))..))))))....))........(((((((.(((((.....))))).))))))). ( -30.30)
>DroSec_CAF1 25698 96 - 1
UUUAAUGACCUAACCGUUA------UUGUUGCUUUUGCCGGUUGC-----UGCUCGCUGGUUUUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA
..(((((((......))))------)))..((....((((((...-----.....))))))....))........(((((((.(((((.....))))).))))))). ( -26.10)
>DroSim_CAF1 23650 96 - 1
UUUAAUGACCUAACCGUUA------UUGUUGCUUUUGCCGGUUGC-----UGCUCGCUGGUUGUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA
..(((((((......))))------)))..((....((((((...-----.....))))))....))........(((((((.(((((.....))))).))))))). ( -26.10)
>DroPer_CAF1 13047 91 - 1
UUUAAUGACCCGAACGUUGGUGCUUUUGUUGCUUUUGUCGGCUG--------UACGGUGGUA-----CGGUGGUA---CGGUUGUAUGCAUGUUGUACCGGCAUCAG
...............((((((((...((((((..(((((.((((--------(((....)))-----)))).).)---)))..))).)))....))))))))..... ( -29.60)
>consensus
UUUAAUGACCUAACCGUUA______UUGUUGCUUUUGCCGGUUGC_____UGCUCGCUGGUUGUUGCUUGUUGUAUGUUGGUUGUAUGCAUGUCGUGCCACCAACAA
..(((((.......)))))...........((....((((((.((......))..))))))....))........(((((((.(((((.....))))).))))))). (-14.56 = -15.12 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:39 2006