Locus 2349

Sequence ID X_DroMel_CAF1
Location 6,273,070 – 6,273,182
Length 112
Max. P 0.996233
window3824

overview

Window 4

Location 6,273,070 – 6,273,182
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 75.16
Mean single sequence MFE -18.47
Consensus MFE -12.75
Energy contribution -13.20
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -2.17
Structure conservation index 0.69
SVM decision value 2.67
SVM RNA-class probability 0.996233
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6273070 112 + 22224390
AAAAAAAAGGAACAGAAAACAAAAACAAGCUAAUACAUCAUGGCCAAGUUGCUGUAAUUUACACUAUUAUCAUUCCCAGAUGAACAAAAACAAGCUAUUUCUCAUGAAACUU
.......(((((.((...(((..(((..((((........))))...)))..)))..............(((((....)))))...........)).))))).......... ( -10.10)
>DroSec_CAF1 15354 92 + 1
--AAA------------------AGCUGGUAAGAACAUCAUGGCCAAGUGGCUGUAAUUAACAGUAUUAUCAUUCCCAGAUGAGCUUAAACCAGCUACUUAUCAUGCAACUU
--...------------------((((((((((..((((.(((...(((((((((.....))))).....)))).)))))))..)))..)))))))................ ( -24.10)
>DroSim_CAF1 16920 94 + 1
AAAAA------------------AGCUUGUAAAUUCAUCAUGGCCAAGUGGCUGUAAUUAACACUAUAAUCAUUCCCAGAUGAGCUUAAACAAGCUAUUUAUCAUGAAACUU
.(((.------------------(((((((((.((((((.(((...((((..((((........))))..)))).))))))))).))..))))))).)))............ ( -21.20)
>consensus
AAAAA__________________AGCUAGUAAAUACAUCAUGGCCAAGUGGCUGUAAUUAACACUAUUAUCAUUCCCAGAUGAGCUUAAACAAGCUAUUUAUCAUGAAACUU
.....................................((((((..((((((((((.....)).......(((((....))))).........)))))))).))))))..... (-12.75 = -13.20 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:25 2006