Locus 2342

Sequence ID X_DroMel_CAF1
Location 6,269,604 – 6,269,709
Length 105
Max. P 0.684261
window3810

overview

Window 0

Location 6,269,604 – 6,269,709
Length 105
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 65.57
Mean single sequence MFE -24.00
Consensus MFE -13.03
Energy contribution -13.37
Covariance contribution 0.34
Combinations/Pair 1.29
Mean z-score -1.44
Structure conservation index 0.54
SVM decision value 0.31
SVM RNA-class probability 0.684261
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6269604 105 - 22224390
UGGCUGGCCAAAGUCUUUUGCACUGGGAAAAAAACACCAUGUUUAGGAAGCAAGAAUAAGUCACUUACACCGAUUUCAUUCGUCGAAGUUACAACUAAAAACCAC------------
(((((.((.....((((..(((.(((..........))))))..)))).)).)).....((.((((.(..(((......)))..))))).)).........))).------------ ( -17.20)
>DroSim_CAF1 13164 95 - 1
UGGCUGGCCAAAGUCUUCUGCACUGGAAAAAAAGUGCCA-GUGUGGGAAGCAAGAAUAAGUCAGUUG----------------CGAAGUUGCAUCUGAAAACCAAUAGAUAG-----
(((....)))..(..(((..((((((..........)))-)))..)))..).........((((.((----------------((....)))).))))..............----- ( -27.10)
>DroYak_CAF1 8998 101 - 1
UGGCUGGCCAAAGUCUGUUGCACUGGAAAAAAUGU-CGA-GUGCGUGAAGCAAGAAGAAGCCGGCU---------CUAUU-----GAGUUGCAUCUGAAAACUAAUAGAUAUAUUUU
..((((((.....(((((((((((.((.......)-).)-)))))....)).)))....))))))(---------(((((-----.((((.........))))))))))........ ( -27.70)
>consensus
UGGCUGGCCAAAGUCUUUUGCACUGGAAAAAAAGU_CCA_GUGUGGGAAGCAAGAAUAAGUCAGUU___________AUU___CGAAGUUGCAUCUGAAAACCAAUAGAUA______
(((((.......(..(((((((((((..........))).))))))))..).......)))))...................................................... (-13.03 = -13.37 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:12 2006