Locus 2322

Sequence ID X_DroMel_CAF1
Location 6,254,958 – 6,255,077
Length 119
Max. P 0.508235
window3765

overview

Window 5

Location 6,254,958 – 6,255,077
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.98
Mean single sequence MFE -41.58
Consensus MFE -28.96
Energy contribution -31.21
Covariance contribution 2.25
Combinations/Pair 1.11
Mean z-score -1.57
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.508235
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6254958 119 + 22224390
UUCGACUUGGAUCUG-CCCAGUCGGGUUCAAUAACGUCCUGUUUCGUGUCCUUGCGAUUAGGUUGCGGAGCAGCCGGCUGGAGCCAUGGAUUCAUCCCGGAUUUAUUGCUGCAUUUCCAU
.......((((..((-((((((((((((....)))...((((((((((.(((.......))).))))))))))))))))))(((.((((((((.....)))))))).))))))..)))). ( -46.40)
>DroSec_CAF1 21618 119 + 1
GUCGUCUUGGAUCUG-CCCAGUCGGGUUCAAUAAAGUCCUGUUUCGUGUCCUUGCGAUUAGGUUGCGGAGCAGUCGGCUGGGGCCAUGGAUUCAUCCUGGAUUUAUUGCUGCAUUUCCAG
.......((((..((-(((((((((.............((((((((((.(((.......))).))))))))))))))))))(((.((((((((.....)))))))).))))))..)))). ( -42.81)
>DroEre_CAF1 16191 119 + 1
GCCGACUUGGAUCUG-CCCAGUCCGUUUCAAUAAAGUCCUGUUUCGUGUCCUUGCGUUUCGGUGCCGGAGCGGCCGUCUGGAGCCAGGGAUUCGUCCUGGAUUUAUUGCUGCAUUUCCAU
...((((.((.....-)).)))).((..(((((((.(((.....((.(((((((.(((((((.((((...))))...)))))))))))))).))....))))))))))..))........ ( -41.30)
>DroYak_CAF1 29465 120 + 1
GCCGACUUGGAUCUGGCCCAGUCCGGUCCAAUAAAGUCCUGUUUCGUGUCCUUGCGAUUAGGUGCCGGAGCAGCCGUCUGGAGCCAUGGCUUCAUCCUGGAUUUAUUUCUACAUUUCCGC
((.((.(((((((.(((...))).)))))))..(((((((((((((.(((((.......))).)))))))))...(..((((((....))))))..).))))))...........)).)) ( -35.80)
>consensus
GCCGACUUGGAUCUG_CCCAGUCCGGUUCAAUAAAGUCCUGUUUCGUGUCCUUGCGAUUAGGUGCCGGAGCAGCCGGCUGGAGCCAUGGAUUCAUCCUGGAUUUAUUGCUGCAUUUCCAU
.......((((..((..((((((((.............((((((((((.(((.......))).))))))))))))))))))(((.((((((((.....)))))))).))).))..)))). (-28.96 = -31.21 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:33 2006