Locus 2310

Sequence ID X_DroMel_CAF1
Location 6,243,094 – 6,243,213
Length 119
Max. P 0.637370
window3743

overview

Window 3

Location 6,243,094 – 6,243,213
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.96
Mean single sequence MFE -23.37
Consensus MFE -19.76
Energy contribution -20.32
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.85
SVM decision value 0.21
SVM RNA-class probability 0.637370
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6243094 119 - 22224390
GAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGGGCUGUAAUUGCAGUCCACACAACUUUUCGACUCUCAUUAAAUAUA-ACU
(((((..(((((.....)))))..........((((.........))))....................(((((((....)))))))............)))))............-... ( -27.30)
>DroSec_CAF1 11358 119 - 1
GAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGACCAACUAAAAUCCCCAAUUAAGGCCUGUAAUUGCAGUCCACACAACUUUUCGACGCUCAUUAAAUAUA-ACU
((((...((((..............(((....((((........((((..........)))).......)))).......)))..............)))).))))..........-... ( -20.55)
>DroEre_CAF1 6115 119 - 1
AAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGCGCUGUAAUUGCAGUCUACACAACUUUUCGGCGCUCAUUAAAUAUA-ACU
.......(((((.....)))))((((..(((((..........((((.............))))....(((((((.((..(..((....))..)..)))))))))))))).)))).-... ( -20.22)
>DroYak_CAF1 19115 120 - 1
AAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGGGCUGUAAUUGCAGUCCAUACAACUUUUCGGCGCUCAUUAAAUAUAAACU
.......(((((.....)))))((((..((((((((.......((((.............)))).....(((((((....)))))))............)))...))))).))))..... ( -25.42)
>consensus
AAGUCAAUCGAUUAUUCAUCGAAUAUGCUAAUGGCCAAAUCACUGGGCCCAACUAAAAUCCCCAAUUAAGGGCUGUAAUUGCAGUCCACACAACUUUUCGACGCUCAUUAAAUAUA_ACU
.......(((((.....)))))((((..(((((((........((((.............)))).....(((((((....)))))))...............)).))))).))))..... (-19.76 = -20.32 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:14 2006