Locus 23

Sequence ID X_DroMel_CAF1
Location 65,417 – 65,535
Length 118
Max. P 0.895255
window27

overview

Window 7

Location 65,417 – 65,535
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 75.99
Mean single sequence MFE -21.50
Consensus MFE -9.68
Energy contribution -10.52
Covariance contribution 0.84
Combinations/Pair 1.18
Mean z-score -2.09
Structure conservation index 0.45
SVM decision value 0.99
SVM RNA-class probability 0.895255
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 65417 118 + 22224390
-CUAAAGUAAUACUCCAGGUGAUAUUCUACAUAACGACGUAUGUAAAUACAGCUUGUAUUCAUUUACAAGAGAAAACGUUAUUGACUAUGCGAUGACAUUAAAAGCACCUUAUAACAGU
-.....((.(((....(((((...((((..........((((....))))..((((((......))))))))))...(((((((......)))))))........)))))))).))... ( -22.80)
>DroSec_CAF1 42626 114 + 1
CCUACAGAUAUACUCCAGGUGAUAUUCUACAUAACGACGUAUGUAGAUA-----UGUAUUCAUUUACAAGCAAAAACGUUAUUGGUCAUGCAAUGACAUUAAAAGCACCUUAUAACAAA
................(((((....((((((((......))))))))..-----((((......)))).........(((((((......)))))))........)))))......... ( -22.10)
>DroSim_CAF1 42429 114 + 1
CCUACAGAUAUACUUCAGGUGAUAUUCUACAUAACGACGUAUGUAGAUA-----UGUAUUCAUUUACAAGCAAAAACGUUAUUGGUCAUGCAAUGACAUUAAAAGCACCUUAUAACAAU
................(((((....((((((((......))))))))..-----((((......)))).........(((((((......)))))))........)))))......... ( -22.10)
>DroEre_CAF1 29726 101 + 1
CCUACAGGUAUACUCUAGGUGAUAUUCUGCAUAUCGACAUAUGUAUGUA-----UGUAUUCGUCUACUAGCAAAAACGUUAGUAA--ACUCAAUGGCA--------ACAUU---GCAUU
..((((..(((((......((((((.....))))))......)))))..-----))))...((.(((((((......))))))).--)).(((((...--------.))))---).... ( -24.80)
>DroYak_CAF1 36482 108 + 1
CUUUCCGAUAUACUCCCGGUGAUAUUCAACAUAUCGACAUAUGUA---------UUUAAUCAUCCACAAUCAAAAAUGUUAUUGA--AUGCAACGGAAUUAAAACCACCUUAAAUCAUU
..(((((..........((((((.....((((((....)))))).---------....))))))..((.((((........))))--.))...)))))..................... ( -15.70)
>consensus
CCUACAGAUAUACUCCAGGUGAUAUUCUACAUAACGACGUAUGUAGAUA_____UGUAUUCAUUUACAAGCAAAAACGUUAUUGA__AUGCAAUGACAUUAAAAGCACCUUAUAACAAU
.................((((......((((((......))))))................................(((((((......)))))))........)))).......... ( -9.68 = -10.52 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:34 2006