| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,192,463 – 6,192,563 |
| Length | 100 |
| Max. P | 0.575497 |
| Location | 6,192,463 – 6,192,563 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.37 |
| Mean single sequence MFE | -37.88 |
| Consensus MFE | -21.92 |
| Energy contribution | -23.64 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6192463 100 + 22224390 AGCAGGCGGGGAUUGAGUACCGAAUCCAGCUGGGCCAUAAGGUGCUCGAAUUUGAUUUCAAUAUUAAUUCCAGCCGUGCGAAAGAGACAGCGCGUCAGC---------------C .((.(((.(((((((((((((...(((....)))......)))))))(((......)))......)))))).)))((((..........))))....))---------------. ( -32.50) >DroSec_CAF1 18832 100 + 1 AGCAGGCGGGGAUUGGAUACCGAUUCCAGCUGGGCCACAAGGUGCUCGAAUUUGAUUUCAAUUUCGAUUCCAGCCGUCAGACAGAGACAGCGCGUCAGC---------------A .((.((((((((((((...)))))))).((((((((....)))..(((((.(((....))).)))))..))))))))).......(((.....))).))---------------. ( -37.10) >DroSim_CAF1 20067 100 + 1 AGCAGGCGGGGAUUGGAUACCGAUUCCAGCUGGGCCACAAGGUGCUCGAAUUUGAUUUCAAUUUCGAUUCCAGCCGUCAGACAGAGACAGCGCGUCAGC---------------A .((.((((((((((((...)))))))).((((((((....)))..(((((.(((....))).)))))..))))))))).......(((.....))).))---------------. ( -37.10) >DroEre_CAF1 19162 109 + 1 AGCAGCCAGGGAUUGGAUUCCUAUUCCAGCUG-GCCACCAAGUGCUCGAAAUUGAUUUCAAUUUCGAUUCCAGCCGAGCGAAAGAGACAGCGCCUGAGCGGGGUGGAGC-----A .((.((((((((.(((....))).)))..)))-))((((...((((((((((((....))))))).......((.(..(....)...).))....))))).))))..))-----. ( -38.60) >DroYak_CAF1 20669 114 + 1 AGCAGGCGGGGAUUGGGUUCCGAUUCCAGCUG-GCCACAAAGUGCUCGAAAUUUAUUUCAAUUUCGAUUCCAGCCGAGCGAAAGAGACAGCGCGUGAGCGGGGUGGAGCAGAGCA .((.(((.((((((((...)))))))).))).-)).......(((((((((((......))))))(.(((((.((...(....)......(((....))))).)))))).))))) ( -44.10) >consensus AGCAGGCGGGGAUUGGAUACCGAUUCCAGCUGGGCCACAAGGUGCUCGAAUUUGAUUUCAAUUUCGAUUCCAGCCGUGCGAAAGAGACAGCGCGUCAGC_______________A .((.(((((((((((.....))))))).((((.(((....)))(((.(((.((((........))))))).))).............)))).)))).))................ (-21.92 = -23.64 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006