| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,161,076 – 6,161,167 |
| Length | 91 |
| Max. P | 0.507002 |
| Location | 6,161,076 – 6,161,167 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 88.19 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -15.01 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6161076 91 - 22224390 UGGCGUGGCUUUUCAUAAUUGCCUUUGGCAACAAUAAUGCACUGAAAAAAAAAACGCAAUUCCGUUUGUAAUAACUUCUAAAUACGCCUUU .((((((..((((((....(((..(((....)))....))).))))))...(((((......)))))...............))))))... ( -19.40) >DroSim_CAF1 2082 89 - 1 UGGCGUGGCUUUUCAUAAUUGCCUUUGGCAACAAUAAUGCACUGAAAA--AAAACGCAAUUCCGUUUAUAAUAACUUCUACAUGCGCCUUU .(((((...((((((....(((..(((....)))....))).))))))--.(((((......)))))................)))))... ( -18.50) >DroYak_CAF1 5516 87 - 1 UGGUGUGGCUUUUCAUAAUUGCCUUUGGCUACAAUAACGCACUGAAAA--AAA--GCAGUUCCUAUUAUAAUAACUCAUAAAUACGCCUUC .((((((((((((......(((..(((....)))....)))......)--)))--))........((((........)))).))))))... ( -14.30) >consensus UGGCGUGGCUUUUCAUAAUUGCCUUUGGCAACAAUAAUGCACUGAAAA__AAAACGCAAUUCCGUUUAUAAUAACUUCUAAAUACGCCUUU .((((((..((((((....(((..(((....)))....))).))))))...(((((......)))))...............))))))... (-15.01 = -15.23 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:25 2006