Locus 2273

Sequence ID X_DroMel_CAF1
Location 6,155,647 – 6,155,741
Length 94
Max. P 0.671170
window3684

overview

Window 4

Location 6,155,647 – 6,155,741
Length 94
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 76.82
Mean single sequence MFE -20.15
Consensus MFE -12.52
Energy contribution -13.03
Covariance contribution 0.50
Combinations/Pair 1.17
Mean z-score -1.75
Structure conservation index 0.62
SVM decision value 0.29
SVM RNA-class probability 0.671170
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6155647 94 - 22224390
UGUACACUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA----------AGCCAAAAGCAA-----UAAUGUAAAAGAAACGAGAAUUCGAGUGGG---GGCAA
(((.(((((((..((....))..)))).(((.((((((...(((...----------.)))....(((.-----...)))........)))))).))).)))..---.))). ( -21.50)
>DroSec_CAF1 8743 93 - 1
UGCACGCUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA----------AGCCAAAAGCAA-----UAAUGUAAAAGAAACGAGAAUUCGAGUGG----GGCAA
(((.(((((((..((....))..)))).(((.((((((...(((...----------.)))....(((.-----...)))........)))))).))).))).----.))). ( -22.80)
>DroEre_CAF1 6540 93 - 1
UGCACACUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA----------AGCCAAAAGCAA-----UAAUGUGAAAGAAACGAGAAUUCGAGUGG----GGCAA
(((.(((((((..((....))..)))).(((.((((((...(((...----------.)))....(((.-----...)))........)))))).))).))).----.))). ( -23.20)
>DroWil_CAF1 5511 108 - 1
UGCAUACUUUGAGGCGGUGGCAUGAAAAUGACUUCUCGUAAGAGAAAGAGAGAGGAGAGAGAAAAGGAAAAUGAAAAUGAAAACGAAACGUAA--CCAAAUGAAAAUGGC--
.......((((..(((.((.(((....)))..(((((....))))).....................................))...)))..--.))))..........-- ( -13.10)
>consensus
UGCACACUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA__________AGCCAAAAGCAA_____UAAUGUAAAAGAAACGAGAAUUCGAGUGG____GGCAA
..(((.((((((((.(((((........))))).))))))))..............................................((......)).))).......... (-12.52 = -13.03 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:21 2006