Locus 2265

Sequence ID X_DroMel_CAF1
Location 6,138,180 – 6,138,285
Length 105
Max. P 0.890827
window3666

overview

Window 6

Location 6,138,180 – 6,138,285
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.73
Mean single sequence MFE -47.80
Consensus MFE -20.16
Energy contribution -20.58
Covariance contribution 0.42
Combinations/Pair 1.45
Mean z-score -2.80
Structure conservation index 0.42
SVM decision value 0.96
SVM RNA-class probability 0.890827
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6138180 105 - 22224390
AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCUGUGGGAUGCGGCGUGUACUGCGCGCAGUAGGGCACAUGCCAGGUGUCCGCCACUUGGUGGGCACACAGC
.(((...(((((.((((((((((((....((.(((.....)))))(((((((.((((.....))))...))))))))))))))))))).)))))..)))...... ( -53.90)
>DroVir_CAF1 1569 105 - 1
AGGCACAGCCAUUUUUCUGGCACCUCAAAGCUUUCCGACGGAUUUACCGUAUACACCUCACAGCAGGGCACAUGCCAAACGUUGCCCACUUUGUGGGCGCUCAAC
.((((..((((......))))........((......((((.....)))).....(((......)))))...)))).......((((((...))))))....... ( -30.10)
>DroSec_CAF1 954 105 - 1
AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCCGUGGGAUGCGGCGUGUACUGCGCGCAGUAGGGUACAUGCCAGGUGCCCGCCACUUGGUGGGCACACAGC
.(((...(((((.((((((((((((....((.((((...))))))((((((((((((.....))..)))))))))))))))))))))).)))))..)))...... ( -59.00)
>DroSim_CAF1 3561 105 - 1
AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCCGUGGGAUGCGGCGUGUACUGCGCGCAGUAGGGCACAUGCCAGGUGCCCGCCACUUGGUGGGCACACAGC
.(((...(((((.((((((((((((....((.((((...))))))(((((((.((((.....))))...))))))))))))))))))).)))))..)))...... ( -58.00)
>DroAna_CAF1 1575 105 - 1
AGGCACAGCCAGUUGGGGGGCACUUCAAAGCUGUCCGACGGAUGCGGGGUGUACACCUCGCAAUAGGGAACAUGCCAAGUGCCGGUGACUUUGUGUGCUACCAAU
.(((((.....((((((.(((........))).))))))((.((((((((....))))))))...(....)...))..)))))((((.(.......).))))... ( -42.50)
>DroMoj_CAF1 6364 105 - 1
AUGCACAGCCACUUCUCUGGCACCUCGAAGCUGUCUGGGGGAUUGGCGGUGUAUGCUUCGCAGUACGGCACAUGCCAGACAUUGCCCACCUUGUGGGCGCUCAGC
((((((.((((.(((((..(((.(.....).)).)..))))).)))).))))))(((..((.((..(((....)))..))...((((((...))))))))..))) ( -43.30)
>consensus
AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCCGUGGGAUGCGGCGUGUACUCCGCGCAGUAGGGCACAUGCCAGGUGCCCGCCACUUGGUGGGCACACAGC
.(((.............((((((((....(((((..(..(.((((...)))).)..)..)))))..(((....))))))))))).((((...)))))))...... (-20.16 = -20.58 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:06 2006