| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,125,061 – 6,125,169 |
| Length | 108 |
| Max. P | 0.811630 |
| Location | 6,125,061 – 6,125,169 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 72.26 |
| Mean single sequence MFE | -35.63 |
| Consensus MFE | -15.35 |
| Energy contribution | -15.73 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6125061 108 - 22224390 CAGACCCUUCCAUUCCUGGAACUUUCCAGAUGCAAUUGUAAUGCAUAU----------GUACAUAUGGAAAUAGCAUUGUACGCAUACUGGCUUAUGUGCGAGUGGGUUGGUGG-GAAA (..(((..((((((((((((....))))).............((((((----------(((((.(((.......))))))))((......))..)))))))))))))..)))..-)... ( -31.70) >DroSec_CAF1 26322 104 - 1 CAGCCCCUUCCAUUCCAGGAACUUUACAGAUGGAUUUA--GU---CAC----------AUACAAAUGUACAUAGCUGUGUACGCAUACUGGCUUAUGUGCUGGUGUGUUGGUGGGGAAA ...((((..(((.((((.............))))....--..---...----------........((((((....))))))((((((..((......))..))))))))).))))... ( -32.22) >DroEre_CAF1 23446 114 - 1 CAGCCUAGUCCAUUCCAGGAAGUUUCCAGAUGCAGUUA--GU---CACAAGUAUGUACAUAUGUAUGUAUGUAGAUGUGCCCGCACACUGGUUCAUGUGCGGGUGUGGGAGUGGAGAAA ........((((((((.(((....)))...........--..---(((...(((.(((((((....))))))).))).(((((((((........)))))))))))))))))))).... ( -41.70) >DroYak_CAF1 21131 112 - 1 CAGCCCAGUCCAUUCCAGGAACUUUCCAGAUGCAUUUA--GU---CACAAGUACA--UAUAUGUAUGUAAAUAGGUGUGCACGCACACUGUCUCUUGUGAGAGUGUGGAAGUGGGGAAA ...((((.(((......(((....)))....((((((.--.(---((((((((((--((....))))))....((((((....))))))....))))))))))))))))..)))).... ( -36.90) >consensus CAGCCCAGUCCAUUCCAGGAACUUUCCAGAUGCAUUUA__GU___CAC__________AUACAUAUGUAAAUAGCUGUGCACGCACACUGGCUCAUGUGCGAGUGUGGUAGUGGGGAAA ........(((......)))..((((((..............................((((.(((....))).)))).....((((((.((......)).))))))....)))))).. (-15.35 = -15.73 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:04 2006