| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,110,660 – 6,110,755 |
| Length | 95 |
| Max. P | 0.691133 |
| Location | 6,110,660 – 6,110,755 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 60.15 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -8.65 |
| Energy contribution | -8.82 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6110660 95 + 22224390 GCUGGUUAAUUGGCCUGAAAAGCGACCAAAAUGCCAGC-----GGCUCACAGUGGGUCAAACAGGCGUGGA--AAUUUGGCAUUUCAA--AACAUUUUCG--------CACU ((((((...(((((((....)).).))))...))))))-----(((((.....))))).....((.(((((--(((((((....))))--...)))))))--------).)) ( -29.80) >DroSec_CAF1 7189 83 + 1 GCUGGUUAAUUGGCCUGAAAAGCGGCCAAAAUGCUAGC-----GGCUCAC------------AGGCGUGGA--AAUUUGACAUUUGAC--AACAUUUUCG--------CACU ((((((...((((((........))))))...))))))-----.(((...------------.)))(((((--((((((........)--)).)))))))--------)... ( -27.90) >DroSim_CAF1 6768 76 + 1 GCUGGUUAAUUGGCCUGAAAAGCGGCCAAAAUGCUAGC-----GGCUCACAGUGGGUCAAACAGGCGUGGA--AAUUGAA-----------------------------ACU ((((((...((((((........))))))...))))))-----(((((.....))))).............--.......-----------------------------... ( -24.70) >DroEre_CAF1 8073 109 + 1 GCCGGUUAAUUGGCCUGAAAAGCGGCCAAAAUGCUCUUGGCCCAGCCCACAGUGGGUCA-ACAGCCAUGGA--AAUGCGGCAUUUAUACAUAUAUUUUCCAGUAAGCAAAUU ((((.....((((((........))))))...(((.((((((((........)))))))-).)))(((...--.)))))))............................... ( -32.80) >DroWil_CAF1 9492 83 + 1 ACAGGUUAAUUGGCC-GAUUAAUGCCCCAAAUAAUGUU---CCUAUGCACAUUGAUACA-AAAUGAUACGAAAAACACAACACUCCAA------------------------ ...((......(((.-.......))).....((((((.---.......)))))).....-........................))..------------------------ ( -6.40) >DroYak_CAF1 7091 107 + 1 GCCGGUUAAUUGGCCUGAAAAGCGGCCAAAAUGCUCUUGCCCCAGCGCACAGUGGGUCA-ACAGGCAUGGA--AAUGCAGCAUUUUAA--AAUAUUUUCAAGUAACCAGAUG ...(((((...((((........))))((((((((.(((.((((.(.....))))).))-)...((((...--.))))))))))))..--............)))))..... ( -32.30) >consensus GCUGGUUAAUUGGCCUGAAAAGCGGCCAAAAUGCUAGC_____GGCUCACAGUGGGUCA_ACAGGCGUGGA__AAUUCAACAUUUCAA__AA_AUUUUC__________ACU (((......((((((........))))))...(((........))).................))).............................................. ( -8.65 = -8.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:55 2006