Locus 2253

Sequence ID X_DroMel_CAF1
Location 6,083,442 – 6,083,532
Length 90
Max. P 0.528056
window3646

overview

Window 6

Location 6,083,442 – 6,083,532
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 99.56
Mean single sequence MFE -31.36
Consensus MFE -30.70
Energy contribution -30.90
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.98
SVM decision value -0.01
SVM RNA-class probability 0.528056
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6083442 90 - 22224390
GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG
......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00)
>DroSec_CAF1 730 90 - 1
GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG
......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00)
>DroSim_CAF1 978 90 - 1
GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG
......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00)
>DroEre_CAF1 714 90 - 1
GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG
......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00)
>DroYak_CAF1 912 90 - 1
GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGAUGG
........((((((.((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))).)) ( -28.80)
>consensus
GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG
......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). (-30.70 = -30.90 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:47 2006