| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,060,348 – 6,060,441 |
| Length | 93 |
| Max. P | 0.883135 |
| Location | 6,060,348 – 6,060,441 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 89.83 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -26.00 |
| Energy contribution | -26.33 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6060348 93 - 22224390 UCCG--------UAUCGCCAGUGCUACAGUCACUUCCCUGAGGUCUCAGGCAGAACUGAUUGAAUUGAAUAUCAGUUUUCAGCUGGCACAGCUCCCCAGAU ....--------....((((((....((((((.((((((((....)))))..))).))))))(((((.....)))))....)))))).............. ( -27.30) >DroSec_CAF1 71517 93 - 1 UCCA--------UAUCGCCAGUGCUACAGUCACUUCCCUGAGGUCUCAGGCAAAACUGAUUGAAUUGAAUAUCAGUUUUCAGCUGGCACAGCUCCCCAGAC ....--------....((((((..............(((((....))))).(((((((((..........)))))))))..)))))).............. ( -24.30) >DroYak_CAF1 71778 101 - 1 UUCGGUGCCACGCCACGCCAGUGCUACAGUCACUUCCCUGAGGUCUCAGGCAGAACUGAUUGAAUUGAAUAUCAGUUUUCAGCUGGCACAGCUCCCCAGAU ...((((...))))..((((((....((((((.((((((((....)))))..))).))))))(((((.....)))))....)))))).............. ( -30.80) >consensus UCCG________UAUCGCCAGUGCUACAGUCACUUCCCUGAGGUCUCAGGCAGAACUGAUUGAAUUGAAUAUCAGUUUUCAGCUGGCACAGCUCCCCAGAU ................((((((....((((((.((((((((....)))))..))).))))))(((((.....)))))....)))))).............. (-26.00 = -26.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:38 2006