Locus 2235

Sequence ID X_DroMel_CAF1
Location 6,042,040 – 6,042,134
Length 94
Max. P 0.595679
window3623

overview

Window 3

Location 6,042,040 – 6,042,134
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 63.82
Mean single sequence MFE -26.70
Consensus MFE -10.49
Energy contribution -11.21
Covariance contribution 0.72
Combinations/Pair 1.40
Mean z-score -1.82
Structure conservation index 0.39
SVM decision value 0.13
SVM RNA-class probability 0.595679
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6042040 94 - 22224390
UUAAUUCCAUGUUC----UUUAC----AGU------CACCA----A--GUGCGUUUUGCAUUGA------GGAAAUCCCUAGAGGUCAAGCACCUUUUGACCUUUGGCAUUUAUGGAAAU
....(((((((...----.....----...------..((.----(--((((.....)))))..------))......((((((((((((.....))))))))))))....))))))).. ( -27.10)
>DroSec_CAF1 54133 97 - 1
CUAAUUAUAUAUCC----UUUAUA-UUAGC------CACCA----A--GUGCGAUUGGCCCUGA------GGAAAUCCCUGGAGGUCAAGCACCUCUUGACCUUUGGCAUUUAUGGAAAU
(((((.(((.....----..))))-))))(------((..(----(--((((((((..((....------)).))))...((((((((((.....)))))))))).)))))).))).... ( -25.10)
>DroSim_CAF1 50005 94 - 1
CUAAUUAUAUAUCC----CUUAC----AGC------CAACA----A--GUGCGAUUGGCCCUAA------GGAAAUCCCUGGAAGUCAAGCACCUCUUGACCUUUGGCAUUUAUGGAAAU
.............(----((((.----.((------((((.----.--....).)))))..)))------))...((((..((.((((((.....)))))).))..).......)))... ( -21.61)
>DroMoj_CAF1 83957 100 - 1
UUAAAUGCUUCUUU----CUUCC----AGC------CAUUUGUUGAGUGUUCGCUUCGCACUGGCUGAAGGCGAGUCCCUG----UCCA--ACCUGUUGACAUUCGCAAUCUAUGGAAAU
........((((..----((((.----(((------((..(((.((((....)))).))).)))))))))(((((....((----((.(--(....))))))))))).......)))).. ( -25.40)
>DroAna_CAF1 58156 108 - 1
GGUACUAUAUGUAGUUCUUUGAUCCUCAGCUACCAGCACGA----G--GUGAGAUUCGCCCUGA------AGGACUCCCAGGAGGUGAGCAACCUGCUCACCUUUGCGGUUUAUGGAAAU
....(((((...((((((((........((.....))....----(--(((.....))))..))------)))))).((.((((((((((.....))))))))))..))..))))).... ( -34.30)
>consensus
CUAAUUAUAUAUCC____UUUAC____AGC______CACCA____A__GUGCGAUUCGCCCUGA______GGAAAUCCCUGGAGGUCAAGCACCUCUUGACCUUUGGCAUUUAUGGAAAU
...........................................................................(((((((((((((((.....)))))))))))).......)))... (-10.49 = -11.21 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:26 2006