Locus 2234

Sequence ID X_DroMel_CAF1
Location 6,030,820 – 6,030,920
Length 100
Max. P 0.836210
window3622

overview

Window 2

Location 6,030,820 – 6,030,920
Length 100
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 76.41
Mean single sequence MFE -21.02
Consensus MFE -11.03
Energy contribution -12.34
Covariance contribution 1.31
Combinations/Pair 1.06
Mean z-score -2.23
Structure conservation index 0.52
SVM decision value 0.73
SVM RNA-class probability 0.836210
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6030820 100 - 22224390
UUACAAGAAAACAAGAAAUGUCGGCUAACUAUGCGUAUACGUGAUUUUUGACCUUUGAGU-CCUUCGAAUAUUACGUAUACGCACUGUUUUGAAUUUUAUA
..............(((((.((((..(((..((((((((((((((.(((((.........-...))))).))))))))))))))..))))))))))))... ( -26.50)
>DroSec_CAF1 43069 96 - 1
UUACA-GAAAACA-CAAAUGUUGGCUAACUAUACGUAUACGUGAUUUUUA--CUUUAGUU-CUAUCGAAUAUUACGUAUACGCAGUGUUUUUAAUUUAUAA
.....-(((((((-(....(((....)))....((((((((((((.....--.....(((-(....))))))))))))))))..))))))))......... ( -21.20)
>DroEre_CAF1 38798 83 - 1
----------ACAAGAAAUGUCGGCUAACUAUACGUAUACGUGAUUUUUGACUUAU-------UUCGAAUAUUAAGU-UACGCACCGAUAUUAAUUUUAUA
----------......((((((((.......((((....)))).....(((((((.-------.........)))))-))....))))))))......... ( -15.40)
>DroYak_CAF1 40927 101 - 1
UUUCUCGAAAACAAGAAAUGUUGGCUAACUGUACGUAUACGUGAUAUUUGACUUUUGAGUCCAUUCGAAUAUUAGGUAUGCACACUGUUUUUAAUUUUAUA
......(((((((..........((.....))..((((((.((((((((((....((....)).)))))))))).))))))....)))))))......... ( -21.00)
>consensus
UUACA_GAAAACAAGAAAUGUCGGCUAACUAUACGUAUACGUGAUUUUUGACCUUUGAGU_C_UUCGAAUAUUACGUAUACGCACUGUUUUUAAUUUUAUA
.................................((((((((((((.(((((.............))))).))))))))))))................... (-11.03 = -12.34 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:25 2006