Locus 2232

Sequence ID X_DroMel_CAF1
Location 6,030,111 – 6,030,229
Length 118
Max. P 0.567374
window3619

overview

Window 9

Location 6,030,111 – 6,030,229
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -30.95
Consensus MFE -26.92
Energy contribution -27.80
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.07
SVM RNA-class probability 0.567374
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6030111 118 - 22224390
CCUCACGAGGUACUGGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCGUCCUCU--GUUUGCCAUUUGGGAAGCUAUUAAAGUGAAAUUUCGUUGGGAUUCAAUAAAGCUUACAUAUUGC
.....(((.(((..(((.((((((((((.(((((((((((....(((.((((..--((.....))..)))).)))....))))))))....)))..)))))))))).))))))...))). ( -30.60)
>DroSec_CAF1 42362 120 - 1
CCUCACGAGGUACUCGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCGUCCUCUGUGUUUGCCAUUUGGGAAGCUAUUAAAGUGAAAUUUCGUUGGGAUUCAAUAAAGCUUACAUAUUGC
(((....))).....((.((((((((((.(((((((((((....(((.((((..(((.....)))..)))).)))....))))))))....)))..)))))))))).))........... ( -32.50)
>DroEre_CAF1 38106 110 - 1
CCUCACGAGGUACUCGUAUUAUUGAAUCAAACUUUUACUUGGCCGGAGUCCUCUGUGCUUGCCAUUUGGGAGGCUAUUAAAGUGAAAUUUUGUUGGGAUUCAAUAAAGCU----------
....(((((...))))).((((((((((.(((((((((((...((((....)))).((((.((....)).)))).....))))))))....)))..))))))))))....---------- ( -30.80)
>DroYak_CAF1 40276 120 - 1
CCUCACGAGGUACUCGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCAUCCUCUGUGCUUGUGAUUUGGGAGACUGUUAAGGUGAAAUUUAGUUGGGAUUCAAUAAAGCUCACAUAUUGG
(((....))).....((.((((((((((.(((((((((((...(((..((((..((.(....)))..))))..)))...)))))))....))))..)))))))))).))........... ( -29.90)
>consensus
CCUCACGAGGUACUCGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCGUCCUCUGUGCUUGCCAUUUGGGAAGCUAUUAAAGUGAAAUUUCGUUGGGAUUCAAUAAAGCUUACAUAUUGC
(((....))).....((.((((((((((.(((((((((((....(((.((((..(((.....)))..)))).)))....))))))))....)))..)))))))))).))........... (-26.92 = -27.80 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:22 2006