Locus 2221

Sequence ID X_DroMel_CAF1
Location 5,989,317 – 5,989,416
Length 99
Max. P 0.894310
window3604

overview

Window 4

Location 5,989,317 – 5,989,416
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 81.91
Mean single sequence MFE -33.05
Consensus MFE -21.89
Energy contribution -23.33
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -2.38
Structure conservation index 0.66
SVM decision value 0.98
SVM RNA-class probability 0.894310
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5989317 99 + 22224390
GGCGUGGAGUGCUGUGGUGCGGAUGUGGCAGGCACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUUGGGCUAAAAAUAAUGCCACUCCACUCA
.(.((((((((((((((((..((((((.....))))))..((((((.......))))))))))))))).....(((..........)))))))))).). ( -42.70)
>DroSec_CAF1 4434 95 + 1
GGAGUGGAGGGCUGUGUUGCGGAUGUGG----CACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUCGGGCUAAAAAUAAUGCCAAUCCACUCA
.(((((((((((((((.((..((((...----..))))..((((((.......)))))))).)))))))))).(((..........)))....))))). ( -36.70)
>DroEre_CAF1 4252 79 + 1
----------------GUGUGGAUGUGG----CACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUUGGGCUAAAAAUAAUGACAUUCCACUCA
----------------(.(((((.(((.----((.......(((((.......((((........))))....))))).......)).)))))))).). ( -19.74)
>consensus
GG_GUGGAG_GCUGUGGUGCGGAUGUGG____CACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUUGGGCUAAAAAUAAUGCCAAUCCACUCA
...(((((..........(((((((((.....))))))..((((((.......))))))...)))((((....))))..............)))))... (-21.89 = -23.33 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:09 2006