Locus 2218

Sequence ID X_DroMel_CAF1
Location 5,983,921 – 5,984,029
Length 108
Max. P 0.970471
window3596 window3597

overview

Window 6

Location 5,983,921 – 5,984,029
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 93.15
Mean single sequence MFE -40.73
Consensus MFE -36.91
Energy contribution -37.47
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.98
Structure conservation index 0.91
SVM decision value 1.66
SVM RNA-class probability 0.970471
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5983921 108 + 22224390
AUACAUGUUUAGUUGGGAUAAGGGUGGCAGAGUGGGCGGCAGUAACGCCCACUUAUGUCACUGACUGCUGCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU
..(((.((..(((..((((...((((((((((((((((.......))))))))).)))))))(((.(((((....))))).)))......))))..)))....))))) ( -46.00)
>DroSim_CAF1 617 105 + 1
AUACAUGUUUAGUUGGGAUAAGGGCGACAAAGUGGGCGGCUGUUACGCCCACUUAUAUCACUGACU---GCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU
..(((.((..(((..((((.(.((((((((((((((((.......)))))))))..........((---((....)))).))))))).).))))..)))....))))) ( -38.50)
>DroYak_CAF1 878 105 + 1
AUACAUGUUUAGCUGGGAUAAGGGUGGCAGAAUGGGCGGCAGUAACGCCCACUUAUGUCACUGACU---GCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU
..............((.((((((((((((...((((((.......))))))....))))))((((.---(((((.......))))).))))......)))))).)).. ( -37.70)
>consensus
AUACAUGUUUAGUUGGGAUAAGGGUGGCAGAGUGGGCGGCAGUAACGCCCACUUAUGUCACUGACU___GCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU
..............((.(((((((((((((((((((((.......))))))))).))))))((((....(((((.......))))).))))......)))))).)).. (-36.91 = -37.47 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 5,983,921 – 5,984,029
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 93.15
Mean single sequence MFE -29.70
Consensus MFE -26.63
Energy contribution -25.97
Covariance contribution -0.66
Combinations/Pair 1.13
Mean z-score -2.59
Structure conservation index 0.90
SVM decision value 1.22
SVM RNA-class probability 0.932935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5983921 108 - 22224390
ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGCAGCAGUCAGUGACAUAAGUGGGCGUUACUGCCGCCCACUCUGCCACCCUUAUCCCAACUAAACAUGUAU
.((((((...(((.....)))...(((.((.((....)).)).))).))).....((((((((.......)))))))))))........................... ( -28.20)
>DroSim_CAF1 617 105 - 1
ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGC---AGUCAGUGAUAUAAGUGGGCGUAACAGCCGCCCACUUUGUCGCCCUUAUCCCAACUAAACAUGUAU
.....(((.........((((..((((.......)))).---.))))((((((.(((((((((.......)))))))))))))))..................))).. ( -31.20)
>DroYak_CAF1 878 105 - 1
ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGC---AGUCAGUGACAUAAGUGGGCGUUACUGCCGCCCAUUCUGCCACCCUUAUCCCAGCUAAACAUGUAU
..(((.....((((...((((..((((.......)))).---.)))).))))...((((((((.......)))))))).................))).......... ( -29.70)
>consensus
ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGC___AGUCAGUGACAUAAGUGGGCGUUACUGCCGCCCACUCUGCCACCCUUAUCCCAACUAAACAUGUAU
...(((....((((...((((..((((.......)))).....)))).))))...((((((((.......)))))))).))).......................... (-26.63 = -25.97 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:03 2006