Locus 2217

Sequence ID X_DroMel_CAF1
Location 5,982,678 – 5,982,784
Length 106
Max. P 0.553483
window3595

overview

Window 5

Location 5,982,678 – 5,982,784
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.95
Mean single sequence MFE -24.90
Consensus MFE -23.52
Energy contribution -23.24
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.16
Structure conservation index 0.94
SVM decision value 0.04
SVM RNA-class probability 0.553483
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5982678 106 + 22224390
UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUCGUCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA--------------AAACCAAAGCA
(((....((....))..((...(((((....((((((.(((...((((((((.......))))))))))).)).))))......)))))..))..--------------...)))..... ( -22.30)
>DroSec_CAF1 6861 106 + 1
UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUUAGCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA--------------AAACCAAAGCA
(((....((....))..((...(((((....((((.(((((...((((((((.......))))))))))).)).))))......)))))..))..--------------...)))..... ( -22.40)
>DroSim_CAF1 19668 106 + 1
UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUCGGCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA--------------AAACCAAAGCA
(((....((....))..((...(((((....((((.(((((...((((((((.......))))))))))).)).))))......)))))..))..--------------...)))..... ( -26.00)
>DroEre_CAF1 6845 120 + 1
UGGGAAAGCAGCAGCCAGGCAGUUGUGAAGGACUCGGCUGAAAGUCUGGACUCGAUUUAAGUUUAGAUGACGCGGAGUAAAAAAUACAAAGCCAAAAGCCAAAAACCAAAAACCAAAGCA
(((....((....))..(((..(((((....((((.((.....(((((((((.......)))))))))...)).))))......))))).)))............)))............ ( -27.70)
>DroYak_CAF1 16735 112 + 1
UGGGAAAGCAGCAGCCAGGCAGUUGUGAAGGACUCGGUUUAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAAUACAAAGCCAAAAACCA--------AAACCAAAGCA
(((....((....))..(((..(((((....((((.((.(...(((((((((.......))))))))).).)).))))......))))).))).....)))--------........... ( -26.10)
>consensus
UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUCGGCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA______________AAACCAAAGCA
(((....((....))..((...(((((....((((.((.....(((((((((.......)))))))))...)).))))......)))))..))...................)))..... (-23.52 = -23.24 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:01 2006