Locus 2210

Sequence ID X_DroMel_CAF1
Location 5,968,673 – 5,968,793
Length 120
Max. P 0.587381
window3585

overview

Window 5

Location 5,968,673 – 5,968,793
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -42.00
Consensus MFE -39.30
Energy contribution -38.97
Covariance contribution -0.33
Combinations/Pair 1.07
Mean z-score -1.64
Structure conservation index 0.94
SVM decision value 0.11
SVM RNA-class probability 0.587381
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5968673 120 + 22224390
UGUCCAUUGUGCGCAGCAUCACGAAUAGCUGGCGUCGCAGAUUGGGCAUAAACCGGACCAAUUUGAGGAUUCGCAGCAACCGGAAUGUCCGCAACACGGACAGUCCGGAGCCACCACCAC
........(((.((.............(((((.(((.((((((((............))))))))..))).).))))..(((((.((((((.....)))))).))))).)))))...... ( -42.50)
>DroSim_CAF1 2815 120 + 1
UGUCCAUUGUGCGCAGCAUCACGAAUAGCUGGCGUCGCAGGUUGGGCAUAAACCGGACCAACUUGAGGAUUCGCAGCAACCGGAAUGUCCGCAACACGGACAGACCGGAGCCACCACCAC
........(((.((.............(((((.(((.((((((((............))))))))..))).).))))..((((..((((((.....))))))..)))).)))))...... ( -42.80)
>DroYak_CAF1 2787 120 + 1
UGUCCAUAGUGCGCAGCAUCACGAAUAGCUGGCGCCGCAGGUUGGGCAUAAACCGGACCAACUUGAGGAUUCUCAGCAACCGGAAAGUCCGCAACACGGACAGACCGGAGCCACCACCAC
........(((.((.............(((((..((.((((((((............)))))))).))....)))))..((((...(((((.....)))))...)))).)))))...... ( -40.70)
>consensus
UGUCCAUUGUGCGCAGCAUCACGAAUAGCUGGCGUCGCAGGUUGGGCAUAAACCGGACCAACUUGAGGAUUCGCAGCAACCGGAAUGUCCGCAACACGGACAGACCGGAGCCACCACCAC
........(((.((.............(((((..((.((((((((............)))))))).))...).))))..((((..((((((.....))))))..)))).)))))...... (-39.30 = -38.97 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:52 2006