| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,953,642 – 5,953,759 |
| Length | 117 |
| Max. P | 0.550140 |
| Location | 5,953,642 – 5,953,759 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.31 |
| Mean single sequence MFE | -50.78 |
| Consensus MFE | -37.33 |
| Energy contribution | -36.72 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5953642 117 - 22224390 AGGACGAGCUCGAUAUGGAGGUGGAGCUCGAGCGCGAGCUGGUGCGCGAGCAGGAGUUCGCCCAGGAGCAAAAGCUGUGCCAGCAGCUGGCGGAGGCGCAAUCAAAGGCG---GCCGCUC .((.(((((((.((......)).)))))))...(((((((..(((....)))..)))))))))..((((...((((((....))))))......(((((........)).---))))))) ( -53.30) >DroVir_CAF1 12002 117 - 1 AAGAUGAGCUCGAUAUGGAGGUGGAGCUGGAGCGUGAGCUGGUCCGCGAACAGGAGUUCGCCCAGGAGCAGAAACUCUGCCAGCAGCUGGCGGAGGCGCAGGCCAAGCUA---AUUGCAC ......(((((.((......)).)))))((.((((...(((.(((((((((....))))))...))).)))...(((((((((...)))))))))))))...))..((..---...)).. ( -48.80) >DroGri_CAF1 11391 120 - 1 AAGAUGAGCUUGACAUGGAGGUCGAACUGGAGCGUGAGCUCGUACGCGAACAGGAGUUCGCACAGGAGCAGAAACUCUGCCAGCAGCUGGCGGAGGCGCAGAGCAAGGCCGCUGUCGUUC .....((((..((((.(..((((...(((((((....))))....((((((....)))))).)))..((.(...(((((((((...))))))))).))).......)))).))))))))) ( -49.70) >DroWil_CAF1 1274 117 - 1 AGGACGAGCUCGAUAUGGAGGUGGAGCUCGAGCGCGAGCUGGUGCGUGAACAGGAAUUCGCCCAGGAACAGAAGCUGUGCCAGCAGCUGGCGGAGGCGCAAGCGAAGGCG---CCAGCUC ....(((((((.((......)).))))))).....((((((((((...........((((((..........((((((....)))))))))))).((....))....)))---))))))) ( -53.30) >DroMoj_CAF1 13115 117 - 1 AAGACGAGCUCGACAUGGAGGUGGAGCUGGAGCGCGAGCUGGUGCGCGAGCAGGAGUUUGCCCAGGAGCAAAAACUGUGCCAGCAGCUGGCGGAGGCGCAGGCCAAGCUG---CCCGCAC ....(.(((((.((......)).))))).).((((.(((((.((.((..((((...(((((......)))))..)))))))).))))).))...((.((((......)))---))))).. ( -50.40) >DroAna_CAF1 1985 117 - 1 AAGACGAGCUCGACAUGGAGGUGGAGCUGGAGCGUGAGCUGGUGCGCGAACAGGAGUUUGCCCAGGAGCAGAAGCUGUGCCAGCAGCUGGCGGAGGCGCAAUCUAAGGCG---GCACCGC ....(.(((((.((......)).))))).)(((....(((((..(((((((....)))))).....(((....))))..))))).))).((((.(.(((........)))---.).)))) ( -49.20) >consensus AAGACGAGCUCGACAUGGAGGUGGAGCUGGAGCGCGAGCUGGUGCGCGAACAGGAGUUCGCCCAGGAGCAGAAACUGUGCCAGCAGCUGGCGGAGGCGCAAGCCAAGGCG___GCCGCUC ....(.(((((.((......)).))))).).((((..(((..((.((((((....)))))).))..))).....((.((((((...)))))).))))))..................... (-37.33 = -36.72 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:35 2006