| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,944,518 – 5,944,616 |
| Length | 98 |
| Max. P | 0.933322 |
| Location | 5,944,518 – 5,944,616 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 83.44 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -17.09 |
| Energy contribution | -17.25 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5944518 98 - 22224390 CUCAUCCACAUUCGGAUCC--ACCU---GCCCCCCCCCCUUCCAUUCUUCUCUGCUGGCUUUAUUAAAUUAAAAUAACGAAAAGCCAAGCUCGGUGGGUGAAU .((((((((....(((...--....---............)))..........(((((((((..................)))))).)))...)))))))).. ( -23.08) >DroSec_CAF1 31867 88 - 1 CUCAUCCACAUUUGGAUCC--ACCU---GCCC-CC---------UUCUUCACUGCUGGCUUUAUUAAAUUAAAAUAACGAAAAGCCAAGCUCGUUGGGUGAAU .((((((((....((....--.)).---....-..---------.........(((((((((..................)))))).)))..).))))))).. ( -17.97) >DroSim_CAF1 38121 89 - 1 CUCAUCCACAUUUGGAUCC--ACCU---GCCCCCC---------UUCUUCUCUGCUGGCUUUAUUAAAUUAAAAUAACGAAAAGCCAAGCUCGGUGGGUGAAU ...(((((....))))).(--(((.---.((....---------.........(((((((((..................)))))).)))..))..))))... ( -22.63) >DroEre_CAF1 31717 89 - 1 CUCAUCCAGAUUCGGAUCC--CCCUUCGGCGC-----------CUUCUUCCCAGUUGGCUUUAUCAAAUUAAAAUAACGAA-AGCCAAGCUCGUUGGCUGAAU ...((((......))))..--...((((((((-----------(..((....))..)))...............((((((.-.((...)))))))))))))). ( -18.40) >DroYak_CAF1 34453 97 - 1 CUCAUCUACAUUGGGAUCCAUCCCACCUGCCC-CC-----UUCUUUCUUCCCAGUUGGCUUUAUUAAAUUAAAAUAACGAAAAGCCAAGCUCGGUGGCUGAAU .(((.((((..(((((....))))).......-..-----..........(.((((((((((..................)))))).)))).))))).))).. ( -20.17) >consensus CUCAUCCACAUUCGGAUCC__ACCU___GCCC_CC_________UUCUUCCCUGCUGGCUUUAUUAAAUUAAAAUAACGAAAAGCCAAGCUCGGUGGGUGAAU .((((((((....((.......)).............................(((((((((..................)))))).)))...)))))))).. (-17.09 = -17.25 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:31 2006