Locus 2164

Sequence ID X_DroMel_CAF1
Location 5,872,705 – 5,872,803
Length 98
Max. P 0.973564
window3506

overview

Window 6

Location 5,872,705 – 5,872,803
Length 98
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 75.34
Mean single sequence MFE -33.78
Consensus MFE -14.50
Energy contribution -17.02
Covariance contribution 2.52
Combinations/Pair 1.17
Mean z-score -2.30
Structure conservation index 0.43
SVM decision value 1.71
SVM RNA-class probability 0.973564
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5872705 98 - 22224390
UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG--GCCCAUUUGGCAAAUGGGAAAG---GUGCAUAAGCGUGGGC-----UAGAAA--UAUCGAGAAAAUCGA
...(((((..((((((.((((((((((......))))).--.((((((.....))))))...)---))))))))))...)))-----.))...--..((((.....)))) ( -34.50)
>DroSec_CAF1 77609 92 - 1
UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG--GCCCAUU------GUGGGUAAG---GUGCAUAAGCGUGGGC-----UAGAAA--UAUCGACAGAAUCGA
...(((((..((((((.((((((((((......))))).--((((...------..))))..)---))))))))))...)))-----.))...--..((((.....)))) ( -32.70)
>DroSim_CAF1 80265 97 - 1
UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG--GCCCAUUUGGCA-GUGGGAAAG---GUGCAUAAGCGUGGGC-----UAGAAA--UAUCGACAGAAUCGA
...(((((..((((((.((((((((((......))))).--.(((((......-)))))...)---))))))))))...)))-----.))...--..((((.....)))) ( -33.40)
>DroEre_CAF1 75804 88 - 1
UGACUGCCAAGCUUAUCGCGCCGUCCAAAGGCGGGGAUG--GCGCAUUUGGCA-GUGGGAACG---GUGCAUAUGCGUGGGC-----UAGGUA-----------UAUCGA
....((((.(((((((.(((((((((........)))))--)))).....(((-.((....))---.)))......))))))-----).))))-----------...... ( -37.80)
>DroYak_CAF1 83298 95 - 1
UGACUGC--------------CGUCCAAAGGCGUGGAUUCAUUUCCUUUGGCA-GUGGGAAAGCUGCUGCAUAUGCGUGUGCAUCGAUAGGGAGCUAUCGAUAUUAUCGA
.....((--------------(.......)))..(((......)))...((((-((......))))))(((((....)))))((((((((....))))))))........ ( -30.50)
>consensus
UGACUGCCAAGCUUAUCGCGCCGUUCAAAGGCGUGGAUG__GCCCAUUUGGCA_GUGGGAAAG___GUGCAUAAGCGUGGGC_____UAGAAA__UAUCGACAGAAUCGA
.....(((..((((((.((((((((((......))))))...(((((.......))))).......))))))))))...)))............................ (-14.50 = -17.02 +   2.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:39 2006