| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,866,587 – 5,866,682 |
| Length | 95 |
| Max. P | 0.574354 |
| Location | 5,866,587 – 5,866,682 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -13.68 |
| Energy contribution | -13.57 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5866587 95 + 22224390 GUCUUAAAUUGCAUAGCCGA-GCACAUGAAAAACAAGCAAUUUAGGGCAAUUUCGAUUAAAAUCAAUAUUUACAAGGCUCAACCAGCUUCGGCAGG------------------- ((((((((((((...((...-))...((.....)).))))))))))))......(((....)))..................((.((....)).))------------------- ( -19.60) >DroSim_CAF1 74265 94 + 1 GUCUUAAAUUGCAUAGCCGA-GCACAUGAAAAACAAGCAAUUUAGGGCAAUUUCGAUUAAAAUCAAUAUUUACAAGGCUCA-CCAGCUUCGGCAGG------------------- ((((((((((((...((...-))...((.....)).))))))))))))......(((....))).................-((.((....)).))------------------- ( -19.60) >DroEre_CAF1 70161 95 + 1 GUCUUAAAUUGCAUAGCCGA-GCACAUGAAAAACAAGCAAUUUAGGGCAAUUUCGAUUAAAAUCAAUAUUUACAAGGCCCAACCAGCUGCGGCAGG------------------- ((((((((((((...((...-))...((.....)).))))))))))))......(((....)))............(((((......)).)))...------------------- ( -19.40) >DroYak_CAF1 77424 91 + 1 GUCUUAAAUUGCAUGGCCGA-GCACAUGAAAAACAAGCAAUUUAGGGCAAUUUCGAUUAAAAUCAAUAUUUACAGGGCUC----CGAAGAAGGAGG------------------- ((((((((((((.((.....-............)).))))))))))))......(((....))).............(((----(......)))).------------------- ( -21.63) >DroAna_CAF1 75507 89 + 1 GUUUUAAAUUGCAGAGUCGA-GCACUUGAAAAACAAGCAAUUUAGGGCAAUUUCGAUUAAAAUCAAUAUUUACAGGGUUCG-G-----UGUGAAGG------------------- ((((((((((((....((((-....)))).......))))))))))))......(((....)))....((((((.......-.-----))))))..------------------- ( -16.30) >DroPer_CAF1 95372 112 + 1 GUCUUAAAUUGCAUACCCAAAGCACAUGAAAAACAAGCAAUUUAGGGCAAUUUCGAUUAAAAUCAAUAUUUACAAGGUUCG---AGCUACAAAAACAAAAAAAAACACCAAAAGA ((((((((((((........................))))))))))))...(((((......................)))---))............................. ( -14.81) >consensus GUCUUAAAUUGCAUAGCCGA_GCACAUGAAAAACAAGCAAUUUAGGGCAAUUUCGAUUAAAAUCAAUAUUUACAAGGCUCA_C_AGCUUCGGCAGG___________________ ((((((((((((...((....))...((.....)).))))))))))))......(((....)))................................................... (-13.68 = -13.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:38 2006