Locus 216

Sequence ID X_DroMel_CAF1
Location 766,122 – 766,222
Length 100
Max. P 0.812970
window327

overview

Window 7

Location 766,122 – 766,222
Length 100
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 89.21
Mean single sequence MFE -37.50
Consensus MFE -29.42
Energy contribution -29.98
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.78
SVM decision value 0.65
SVM RNA-class probability 0.812970
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 766122 100 + 22224390
-UUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGUUGCCUUACAGCGGU-----------UCAACAGCGCCUA
-.................((((((((.((....))..((((((..((((...(((((((((........)))))))))))))..))))-----------))))))))))... ( -39.20)
>DroSec_CAF1 79185 100 + 1
-CUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGUAACAGUGCGCAACAACUGUUGCCUUACAGCGGU-----------UCAACAGCGCCUA
-.................((((((((.((....))..((((((..((((...(((((((((........)))))))))))))..))))-----------))))))))))... ( -37.20)
>DroSim_CAF1 42145 100 + 1
-CUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGUAACAGUGCGCAACAACUGUUGCCUUACAGCGGU-----------UCAACAGCGCCUA
-.................((((((((.((....))..((((((..((((...(((((((((........)))))))))))))..))))-----------))))))))))... ( -37.20)
>DroEre_CAF1 94759 112 + 1
CCUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCACGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGCUGCCUUACAGCGACCCAACAGCGUCCCAACAGCGCCUA
..................((((((((.((((((((((...(((........))).....))))))......(((((.....)))))........))))...))))))))... ( -35.00)
>DroYak_CAF1 83582 112 + 1
CCUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAGGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGCUGUCUUACAGCGACCCAACAGCCACUCAACAGCGCCUA
.......(((((((((.(((((((((..(((.(((..........)))..)))..))))))))).......(((((.....))))).......))))))))).......... ( -38.90)
>consensus
_CUAACAUGAGUGGCUUCGCGCUGUUAGCGUGCGCAAGAACUGGAGUGGAACGGCAACAGUGCGCAACAACUGUUGCCUUACAGCGGU___________UCAACAGCGCCUA
..................((((((((...((((((.....(((........))).....))))))....(((((((.....))))))).............))))))))... (-29.42 = -29.98 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:11 2006