Locus 2144

Sequence ID X_DroMel_CAF1
Location 5,811,101 – 5,811,197
Length 96
Max. P 0.964495
window3478

overview

Window 8

Location 5,811,101 – 5,811,197
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 89.24
Mean single sequence MFE -27.30
Consensus MFE -25.80
Energy contribution -26.13
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.95
SVM decision value 1.57
SVM RNA-class probability 0.964495
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5811101 96 + 22224390
UCACGCAGCUAGAGCUAGAGCUGGAAAAACAUCGAUGCUCGUCGCCGUCGAUGUUUUCGAUGUUUUAUGGCGAGAACAUUGACUAUCGAAAAAUAA
((...(((((........)))))((.((((((((((((.....).)))))))))))((((((((((......))))))))))...))))....... ( -27.60)
>DroSec_CAF1 16670 94 + 1
UCACGCAGCUAGAGCUAGAGCUGGAAAAACAUCGAUGCUUACUGCCGUCGAUGUUUUCGAUGUUUUAUGGGGAGAACAUUGACUAUCGAA--AUAA
((...(((((........)))))((.((((((((((((.....).)))))))))))((((((((((......))))))))))...)))).--.... ( -28.20)
>DroSim_CAF1 17175 90 + 1
UCACGCAGCUA------GAGCUGGAAAAACAGCGAUGCUUUCCACCGUCGAUGUUUUCGAUGUUUUAUGGCGAGAACAUUGACUAUCGAAAAAUAA
....(((....------..((((......))))..)))((((....(((((((((((((...........)))))))))))))....))))..... ( -26.10)
>consensus
UCACGCAGCUAGAGCUAGAGCUGGAAAAACAUCGAUGCUUACCGCCGUCGAUGUUUUCGAUGUUUUAUGGCGAGAACAUUGACUAUCGAAAAAUAA
((...(((((........)))))((.(((((((((((........)))))))))))((((((((((......))))))))))...))))....... (-25.80 = -26.13 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:14 2006