| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,742,860 – 5,742,958 |
| Length | 98 |
| Max. P | 0.937622 |
| Location | 5,742,860 – 5,742,958 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.41 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -11.91 |
| Energy contribution | -12.13 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5742860 98 + 22224390 ----------------UUGCAACUUGAAGAUAGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUGAAAUGUGAAACAAACAUA--CAUACAUAUGUA----UGUACAUAGUUAUAAAAAU ----------------..(((..(((.((.(((((......))))).)).)))))).((((((.(...(((.......)))((--(((((....)))----)))))))))))........ ( -19.50) >DroEre_CAF1 16070 96 + 1 ----------------UUGCAACUUGAAGAUGGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUGAAAUGCGAAAAAUACAAAUGCAUAUGUACACA--------CAUAGAUACAAAAAU ----------------(((((..(..(((.((((.....((((....))))...)))).)).)..)..)))))..............(((((....)--------))))........... ( -17.60) >DroYak_CAF1 17335 120 + 1 GUAUGUACAUACAUAGUUGCAACUUGAAGAUGGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUAUAAUGCGAAAAAUACAAAUACAUACAUACAUAUGUAUGUAUUUAGAUAUACAAAU ((((((..........(((((...(((((.((((.....((((....))))...)))).)).)))...))))).......((((((((((((....))))))))))))..)))))).... ( -31.50) >consensus ________________UUGCAACUUGAAGAUGGCCAAAAGCGGUUAACUGCAAUGCCAGCUGUUGAAAUGCGAAAAAUACAAAU_CAUACAUACAUA____UGUACAUAGAUAUAAAAAU ................(((((..((((((.((((.....((((....))))...)))).)).))))..)))))............................................... (-11.91 = -12.13 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:43 2006