Locus 2120

Sequence ID X_DroMel_CAF1
Location 5,740,735 – 5,740,831
Length 96
Max. P 0.614595
window3444

overview

Window 4

Location 5,740,735 – 5,740,831
Length 96
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 79.43
Mean single sequence MFE -27.37
Consensus MFE -13.51
Energy contribution -15.40
Covariance contribution 1.89
Combinations/Pair 1.05
Mean z-score -3.00
Structure conservation index 0.49
SVM decision value 0.16
SVM RNA-class probability 0.614595
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5740735 96 + 22224390
AGCCAGAGUUAUUUUUGGAGUCUUACAGAACUUGGCCGAAAAACGGCUAGCAAAGUAUGCAUAUGUAUGUUCCAAAGAUUUUUCUU------------UAUUAAGUUG
....((((..((((((((((.(.((((.....((((((.....))))))(((.....)))...)))).)))))))))))..)))).------------.......... ( -26.90)
>DroSec_CAF1 13728 99 + 1
AG-AAGAGUUAUUUUUGGAGUCUUACAGAACUGAGCCGAAAAUCGGCCAGCAAAUUAUGCGAAAGUA--------AGAUUUUUCUUUGAACUCAAAGUUAUUAGGUUG
..-..(((((......((((((((((.....((.((((.....))))))(((.....)))....)))--------)))))))......)))))............... ( -26.90)
>DroSim_CAF1 14296 100 + 1
AGCCAGAGUUAUUUUUGGAGUCUUACAGAACUCAGCCGAAAAACGGCUAGCAAAUUAUGCAAAAGUA--------AGAUUUUUCUUUGAACUCAAAGUUAUUCGGUUG
((((.(((((......((((((((((.......(((((.....))))).(((.....)))....)))--------)))))))......)))))...(.....))))). ( -28.30)
>consensus
AGCCAGAGUUAUUUUUGGAGUCUUACAGAACUCAGCCGAAAAACGGCUAGCAAAUUAUGCAAAAGUA________AGAUUUUUCUUUGAACUCAAAGUUAUUAGGUUG
.....(((((......(((((((..........(((((.....))))).(((.....)))...............)))))))......)))))............... (-13.51 = -15.40 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:42 2006