Locus 212

Sequence ID X_DroMel_CAF1
Location 760,771 – 760,864
Length 93
Max. P 0.538581
window322

overview

Window 2

Location 760,771 – 760,864
Length 93
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 90.87
Mean single sequence MFE -23.25
Consensus MFE -19.00
Energy contribution -19.60
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.82
SVM decision value 0.01
SVM RNA-class probability 0.538581
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 760771 93 + 22224390
AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA--------------GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG
...(((((.......)))))..............(((((.--------------((((((.(((....((((.........))))....))).).)))))..))))) ( -23.20)
>DroSec_CAF1 75584 93 + 1
AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA--------------GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG
...(((((.......)))))..............(((((.--------------((((((.(((....((((.........))))....))).).)))))..))))) ( -23.20)
>DroSim_CAF1 38952 93 + 1
AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA--------------GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG
...(((((.......)))))..............(((((.--------------((((((.(((....((((.........))))....))).).)))))..))))) ( -23.20)
>DroEre_CAF1 90753 93 + 1
AACGAUAUCUGCAAUAUAUCCCCACUGCGAGCUCCCCCAA--------------GCUCCCUGCCAGUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG
...(((((.......)))))...((((((((((......)--------------))))...).)))).........((((((.((((((.....)))))).)))))) ( -25.20)
>DroYak_CAF1 79781 107 + 1
CACGAUAUCUACAAUAUAUCCCCACUGCGAGAUCCCCGAACCACCCCGCUCCCUGCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUCGG
..(((.....................(((.................)))....(((((((.(((....((((.........))))....))).).))))))..))). ( -21.43)
>consensus
AACGAUAUCUACAAUAUAUCCCCACUGCGAACUCCCCGAA______________GCUCCCUGCAAAUUGCUCCAAACUCAAGAGUUCCGUGCCGCGGAGCACUUGGG
...(((((.......)))))((((...((.......))................((((((.(((....((((.........))))....))).).)))))...)))) (-19.00 = -19.60 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:06 2006