| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,727,939 – 5,728,045 |
| Length | 106 |
| Max. P | 0.517633 |
| Location | 5,727,939 – 5,728,045 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.60 |
| Mean single sequence MFE | -44.60 |
| Consensus MFE | -26.10 |
| Energy contribution | -27.22 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5727939 106 + 22224390 AAACGCUGCCCGGU---GAGGAAACGGAGGCUACCACUUCCACGGCCAGUGGCAUAAAUCCUGGCCAGGCUCAGACUGCCAAGCCUUAGG----------UGGAUUUGUCUACCGUC-UU ...((((....)))---).(....).((((((...........((((((.((......)))))))).(((.......))).)))))).((----------((((....))))))...-.. ( -38.10) >DroSec_CAF1 1657 107 + 1 AAACGUUGCCCGGC---GAGGAAACGCAGGCUACCACUUCCGCGGCCAGUGGCAUAAACGCUGGCCAGGCCCAGACUGCCAAGCCUUAGG----------UGUAAUUGUCUACCGUCUUA ....(((((((.((---(......)))(((((...........((((((((.......)))))))).(((.......))).)))))..))----------.))))).............. ( -35.80) >DroSim_CAF1 2433 109 + 1 AAACGUUGCCCGGCCAAGAGGAAACGCAGGCUACCACUUCCGCGGCCAGUGGCAUAAACGCUGGCCAGGCCCAGACUGCCAAGCCUUAGG----------UGUAGUUGUCUACCCUC-UA ...((((.(((......).)).)))).(((((...........((((((((.......)))))))).(((.......))).))))).(((----------.((((....))))))).-.. ( -37.90) >DroEre_CAF1 1660 116 + 1 AAACGUUGGCCGGC---GAGGAAACUGAGACUGCCGCUCCCACGGCCAGUGGCAUAACCGCCGGCCAGGCCCAGACUGCCAAGCCUUAGGAGGGCGGGAGUGGAUUUGUCUACCGUC-UA ...........(((---(((....)).((((..((((((((..((((.((((.....)))).)))).(((.......)))..((((.....))))))))))))....))))..))))-.. ( -52.10) >DroYak_CAF1 2511 116 + 1 AAACGUUUGCUGGC---GAGGCAACGGAGGCUGCCGCUCCCACGGCCAGUGGCAUAACCGCUGGCCAGGCCCAGACUGCCAAACCUUAGGUGGGCGGGAGUGGAUUUGUCUACCGUC-UA .......((((...---..))))((((((((..((((((((..(((((((((.....)))))))))..(((((..(((........))).)))))))))))))....)))).)))).-.. ( -59.10) >consensus AAACGUUGCCCGGC___GAGGAAACGGAGGCUACCACUUCCACGGCCAGUGGCAUAAACGCUGGCCAGGCCCAGACUGCCAAGCCUUAGG__________UGGAUUUGUCUACCGUC_UA ..........(((......(....).((((((...........((((((((.......)))))))).(((.......))).)))))).........................)))..... (-26.10 = -27.22 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:32 2006