| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,726,788 – 5,726,884 |
| Length | 96 |
| Max. P | 0.941588 |
| Location | 5,726,788 – 5,726,884 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 96.88 |
| Mean single sequence MFE | -34.80 |
| Consensus MFE | -31.54 |
| Energy contribution | -31.82 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5726788 96 + 22224390 ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAAGCGGAGCGGGGUACCCUGGACUUUCGAGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..(((((......))))))))))))...)..)......(.((....))).))))))))))........ ( -29.70) >DroSec_CAF1 506 96 + 1 ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..((((((....)))))))))))))...)..).......(((....))).))))))))))........ ( -36.80) >DroSim_CAF1 1282 96 + 1 ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..((((((....)))))))))))))...)..).......(((....))).))))))))))........ ( -36.80) >DroEre_CAF1 512 96 + 1 ACAUCAACGAGGUGCUGGAUGACUCUGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCGUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((((((((((((...)))))))(((....)))..)))((.(((((((((....))))).)))).)).))))))))))........ ( -38.40) >DroYak_CAF1 1355 96 + 1 ACAUCAACGAGGUGCUGGAUGAUUCCGUCAUCCGCCAGCAGGCGGAGCGUGGUACCCUCGACUUUCGGGCGUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((((.(((....)))....((((((....)))))))).((((((.((((.....)))).))..))))))))))))))........ ( -32.30) >consensus ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..((((((....)))))))))))))...)..).......(((....))).))))))))))........ (-31.54 = -31.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:31 2006