Locus 2096

Sequence ID X_DroMel_CAF1
Location 5,703,466 – 5,703,560
Length 94
Max. P 0.861681
window3411

overview

Window 1

Location 5,703,466 – 5,703,560
Length 94
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 70.62
Mean single sequence MFE -25.52
Consensus MFE -9.84
Energy contribution -11.02
Covariance contribution 1.19
Combinations/Pair 1.16
Mean z-score -2.68
Structure conservation index 0.39
SVM decision value 0.83
SVM RNA-class probability 0.861681
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5703466 94 - 22224390
UAUGCAACAUGCGUUCGACAAUCAAGCGGC-UGCAAGUCAAAAGUCGAAACUUUAUUUGC---AGCUGCACACAGAGAAAA---------------------CCACAGACGAAAAAAAA-
..(((.....)))((((........(((((-(((((((..(((((....)))))))))))---)))))).......(....---------------------.).....))))......- ( -24.10)
>DroSec_CAF1 24673 101 - 1
UAUGCAACAUGCGUUCGACAAUCAAGCGGC-UGCAAGUCAAAAGUCGAAACUUUAUUUGC---AGCUGCACACAGAGAAAAC------C------U---CAACCACAGACGCAAAAAAAA
.........(((((..(........(((((-(((((((..(((((....)))))))))))---)))))).....(((.....------)------)---).....)..)))))....... ( -32.10)
>DroEre_CAF1 22685 95 - 1
UAUGCAACAUGCGUUCGACAAUCAAGCGGC-GGCAAGUCAAAAGUCAGAACUUUAUUUGC---AGCUGCAC--AGAGGAAAC------C------U---CAACCACAGAGAGAGAA----
.((((.....))))((.....((..(((((-.((((((..(((((....)))))))))))---.)))))..--.((((...)------)------)---).......))....)).---- ( -24.50)
>DroAna_CAF1 19162 115 - 1
UAUGCAACAUGCAUUCGACAAUCAGGCGGAAGGCGGGUCAAAGGGC-AAACUGUAUAUUCCACAAAAGGAC--AAAGGAAAAGGACACCGAAUUCUUAGUACCCUCGGAACUAGAAUG--
((((((...(((.((.(((.....(.(....).)..))).))..))-)...))))))((((......((((--.(((((...((...))...))))).)).))...))))........-- ( -21.40)
>consensus
UAUGCAACAUGCGUUCGACAAUCAAGCGGC_GGCAAGUCAAAAGUCGAAACUUUAUUUGC___AGCUGCAC__AGAGAAAAC______C______U___CAACCACAGACGAAAAAAA__
.((((.....))))...........(((((..((((((..((((......))))))))))....)))))................................................... ( -9.84 = -11.02 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:10 2006