Locus 2095

Sequence ID X_DroMel_CAF1
Location 5,702,178 – 5,702,298
Length 120
Max. P 0.872457
window3410

overview

Window 0

Location 5,702,178 – 5,702,298
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.13
Mean single sequence MFE -23.17
Consensus MFE -17.82
Energy contribution -17.60
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.69
Structure conservation index 0.77
SVM decision value 0.88
SVM RNA-class probability 0.872457
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5702178 120 - 22224390
CUCACAUCUCCUGCUGGGCAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCACAGCUUUUCCACUUUCCCUUCGCUGUUAGUACAAUGCAGCC
............((((...........(((((((((......))))))))).....((((((........))))))...)))).................(((((.........))))). ( -23.50)
>DroSec_CAF1 23410 102 - 1
CUC----CUGCUGCUGGGCAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCGCAGCUUUCCCACUUUCCCUUCG--------------CAGCC
...----..(((((.(((.(((.....(((((((((......))))))))).....((((((........))))))...............))))))...)--------------)))). ( -24.20)
>DroSim_CAF1 26714 102 - 1
CUC----CUGCUGCUGGACAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCACAGCUUUCCCACUUUCCCUUCG--------------CAGCC
...----..(((((.((..........(((((((((......))))))))).....((((((........))))))...................))...)--------------)))). ( -21.80)
>consensus
CUC____CUGCUGCUGGGCAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCACAGCUUUCCCACUUUCCCUUCG______________CAGCC
............((((((.........(((((((((......))))))))).....((((((........)))))))).))))..................................... (-17.82 = -17.60 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:09 2006